| Sequence ID | dm3.chr2R |
|---|---|
| Location | 18,399,785 – 18,399,899 |
| Length | 114 |
| Max. P | 0.942922 |
| Location | 18,399,785 – 18,399,899 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 57.66 |
| Shannon entropy | 0.77759 |
| G+C content | 0.34528 |
| Mean single sequence MFE | -19.81 |
| Consensus MFE | -11.62 |
| Energy contribution | -9.02 |
| Covariance contribution | -2.60 |
| Combinations/Pair | 1.82 |
| Mean z-score | -0.46 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.49 |
| SVM RNA-class probability | 0.942922 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 18399785 114 - 21146708 AUGUGAUUGUACUUUUAAACAAAUUACGACUUGACAUGGUUGCCUUUUGAGUUGGUUUUAAUCUUUUAA-UUUUUAUAAUGCCUCUGUGGUCGCAAUUUGAUCAUAAAAAGUCUG ..((((((((........)).))))))(((((.....(((........(((((((..........))))-))).......)))..((((((((.....))))))))..))))).. ( -18.66, z-score = -0.28, R) >droEre2.scaffold_4845 15042739 96 + 22589142 CCGUUGCUCCACUUUUAUACAUAUUACCACUUGGU-UGGU----------------UUUAGUCUUCUAA--AUUUAUAAUGCCUGUGUGGUCAUAAUGUGAUCAUAAAAAGCCUG .....(((....((((((.(((((((((((..(((-..((----------------(((((....))))--)...))...)))...)))))...))))))...)))))))))... ( -16.80, z-score = -0.75, R) >droSec1.super_9 1708000 115 - 3197100 UUGUGGUUGCACUUUUAAACAAAUUACACCUUGACAUGGUUGCCUUUUGAGUUGGUUUUAAUCUUUUAAUUUUUUAUAAUGCCUUUGUGGUCGCAAUUUGAUCAUAAAAAGUCCG .(((((((.............)))))))....(((..(((........(((((((..........)))))))........)))((((((((((.....))))))))))..))).. ( -17.91, z-score = 0.54, R) >droSim1.chr2R 16992498 104 - 19596830 ------AUGUGGUUUUAAACAAAUUAAACAUUGACAUGGUUGCCUUUUGAG-----UUUAAUCUUUUAAUUUUUUAUAAUGCCUUUGUGGUCGUAAUUAGAUCAUAAAAAGUCCG ------.(((........)))...........(((..(((........(((-----((.........)))))........)))(((((((((.......)))))))))..))).. ( -14.29, z-score = 0.32, R) >droVir3.scaffold_12875 12511399 99 - 20611582 -------------AUAAAGCUCUGCUCUAUUUUAUUGGAUCGAACAUGGAAUGUCUAGGAAUGUGUUUC-UGGCUGAGAUACAUCCGCAGUCGAGCUACGACUGUGGGGGCUG-- -------------....(((((((.((((......)))).))..................(((((((((-.....)))))))))(((((((((.....)))))))))))))).-- ( -31.40, z-score = -2.14, R) >consensus __GU__UUGCACUUUUAAACAAAUUACAACUUGACAUGGUUGCCUUUUGAGU___UUUUAAUCUUUUAA_UUUUUAUAAUGCCUCUGUGGUCGCAAUUUGAUCAUAAAAAGUCCG ................................(((......................((((....))))..............((((((((((.....))))))))))..))).. (-11.62 = -9.02 + -2.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:43:31 2011