| Sequence ID | dm3.chr2R |
|---|---|
| Location | 18,396,566 – 18,396,656 |
| Length | 90 |
| Max. P | 0.904727 |
| Location | 18,396,566 – 18,396,656 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 75.57 |
| Shannon entropy | 0.45260 |
| G+C content | 0.47487 |
| Mean single sequence MFE | -24.08 |
| Consensus MFE | -12.94 |
| Energy contribution | -12.92 |
| Covariance contribution | -0.02 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.18 |
| SVM RNA-class probability | 0.904727 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 18396566 90 - 21146708 UAAAAUACC-------GCUCACUGCUGACUGCUCAAACUCUUCUAUAAUUGAAGCUGUUUGCGGUCCUGCUGUG--UUUGUCUGGGCCCAGAAAAAUGG .......((-------(..(((.((.((((((..((((.((((.......))))..))))))))))..)).)))--....((((....))))....))) ( -24.20, z-score = -2.69, R) >droSim1.chr2R 16989257 94 - 19596830 UAAAAUACCGCUC---GCUCACUGCUGACUGCUCAAACUCUUCUAUAAUUGAAGCUGUUUGCGGUCCUGCUGUG--UUUGUCUGGGCCCAGAAAAAUGG .......(((..(---(..(((.((.((((((..((((.((((.......))))..))))))))))..)).)))--..))..)))..(((......))) ( -25.90, z-score = -2.82, R) >droSec1.super_9 1704812 90 - 3197100 UAAAAUACC-------GCUCACUGCUGACUGCUCAAACUCUUCUAUAAUUGAAGCUGUUUGCGGUCCUGCUGUG--UUUGUCUGGGCCCAGAAAAAUGG .......((-------(..(((.((.((((((..((((.((((.......))))..))))))))))..)).)))--....((((....))))....))) ( -24.20, z-score = -2.69, R) >droYak2.chr2R 15866643 97 - 21139217 UAAAAUACCGCUCACUGCUCACUGCUGACUGCUCAAACUCUUGUAUAAUUGAAGUUGUUUGCGGUCCUGCUGUG--UUUGUCUGGGCCCUGAAAAAUGG .........(((((..((.(((.((.((((((.(((..((..........))..)))...))))))..)).)))--...)).)))))............ ( -23.40, z-score = -2.12, R) >droEre2.scaffold_4845 15039506 97 + 22589142 UAAAAUACCGCUCACUGCUCACUGCUGACUGCUCAAACUCUUGUAUAAUCGAAGCUGUUUGCGGUCCUGCUGUG--UUUGUCUGGGCCCUGAAAAAUGG .........(((((..((.(((.((.((((((..((((.((((......).)))..))))))))))..)).)))--...)).)))))............ ( -21.80, z-score = -1.42, R) >droGri2.scaffold_15245 10466920 83 + 18325388 --------------AAACUCA-AGCGCGCAACU-GAGCAGCUCUGUGCGUGUGCGUGGGCGUGGUGUGGGUGGGGAUUUGCUUGCAUAAUAAUAAGUGG --------------...((((-.(((((((...-(((...)))..)))))))...))))....(((..((..(....)..))..)))............ ( -25.00, z-score = 0.21, R) >consensus UAAAAUACC_______GCUCACUGCUGACUGCUCAAACUCUUCUAUAAUUGAAGCUGUUUGCGGUCCUGCUGUG__UUUGUCUGGGCCCAGAAAAAUGG ...................(((.((.((((((..((((.((((.......))))..))))))))))..)).)))......................... (-12.94 = -12.92 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:43:30 2011