| Sequence ID | dm3.chr2R |
|---|---|
| Location | 18,393,880 – 18,393,975 |
| Length | 95 |
| Max. P | 0.753616 |
| Location | 18,393,880 – 18,393,975 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 74.09 |
| Shannon entropy | 0.45497 |
| G+C content | 0.53590 |
| Mean single sequence MFE | -33.13 |
| Consensus MFE | -18.10 |
| Energy contribution | -19.08 |
| Covariance contribution | 0.98 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.753616 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 18393880 95 + 21146708 -----------AAGGAGACGGAGCAAAGACACUUGACUGCGAGUG----UGGGUGAUACACA----CAUCCUCUUGUGCCGAGUCAACUCAUUCGAGUUGAGCCCACCUCACGU -----------..(....)(.(((((......))).)).)(((.(----(((((......((----((......)))).....(((((((....)))))))))))))))).... ( -31.30, z-score = -1.35, R) >droSim1.chr2R 16986555 95 + 19596830 -----------AAGGAGACGGAGCAAAGACACUUGACUGCGAGUG----UGGGUGAUACACA----CAUCCUCUUGUGCCGAGUCAACUCAUUCGAGUUGAGCCCACCUCACGU -----------..(....)(.(((((......))).)).)(((.(----(((((......((----((......)))).....(((((((....)))))))))))))))).... ( -31.30, z-score = -1.35, R) >droSec1.super_9 1702127 95 + 3197100 -----------AAGGAGACGGAGCAAAGACACUUGACUGCGAGUG----UGGGUGAUACACA----CAUCCUCUUGUGCCGAGUCAACUCAUUCGAGUUGAGCCCAGCUCACGU -----------......(((((((....(((((((....))))))----)((((......((----((......)))).....(((((((....))))))))))).)))).))) ( -35.00, z-score = -2.29, R) >droYak2.chr2R 15863686 103 + 21139217 -----------AAGGAGACGGAGCAAAGUCACUUGACUGCGAGUGAGUGUGGGUGAUACACACACAUAGCCCCUUGUGCCGAGUCAACUCAUUCGAGUUGAGCCCACAUCACGU -----------..(....)...(((..(((....))))))..((((.(((((((........((((........)))).....(((((((....)))))))))))))))))).. ( -35.20, z-score = -1.91, R) >droEre2.scaffold_4845 15036678 95 - 22589142 -----------AAGGAGACGGAGCAAAGACACUUGACUGCGAGUG----UGGGUGAUACACA----UAUCCUCUUGUGCCGAGUCGACUCAUUCGAGUUGAGCCCACCUCACGU -----------..(....)(.(((((......))).)).)(((.(----(((((....((((----........)))).....(((((((....)))))))))))))))).... ( -30.80, z-score = -1.22, R) >droPer1.super_2 7205822 99 + 9036312 AAUACCACUGGCUCAGGAGGGAGCCAGGAUACUUGACUGGGAGGCU---GUGACACGACACG-GCACGAUUACUGGUAUCCUG-CAGCCCAGCCAACUCCUGGC---------- ....((.(((...)))...)).(((((((...(((.(((((..(((---(((......))))-)).......(((........-)))))))).))).)))))))---------- ( -35.20, z-score = -1.27, R) >consensus ___________AAGGAGACGGAGCAAAGACACUUGACUGCGAGUG____UGGGUGAUACACA____CAUCCUCUUGUGCCGAGUCAACUCAUUCGAGUUGAGCCCACCUCACGU .............((...(((.((((...((((((....)))))).....(((((...........)))))..)))).)))..(((((((....)))))))..))......... (-18.10 = -19.08 + 0.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:43:29 2011