| Sequence ID | dm3.chr2R |
|---|---|
| Location | 18,382,004 – 18,382,078 |
| Length | 74 |
| Max. P | 0.979789 |
| Location | 18,382,004 – 18,382,078 |
|---|---|
| Length | 74 |
| Sequences | 6 |
| Columns | 80 |
| Reading direction | reverse |
| Mean pairwise identity | 73.12 |
| Shannon entropy | 0.51728 |
| G+C content | 0.40518 |
| Mean single sequence MFE | -14.81 |
| Consensus MFE | -5.86 |
| Energy contribution | -7.86 |
| Covariance contribution | 2.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.70 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.03 |
| SVM RNA-class probability | 0.979789 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 18382004 74 - 21146708 GAUCUUACAGCCGAAUUCAGAAUCCUGAGU------UAGUCCUGAGCUACAUAUACCCCAUCGGAUUAAGAUCAAUAACU (((((((...((((((((((....))))))------((((.....))))...........))))..)))))))....... ( -19.20, z-score = -3.75, R) >droSim1.chr2R 16974849 80 - 19596830 GAUCUUACAGCCGAAUUCAGAAUUUAACACACCUCAAAGUCCUGAGCUACCUAUUCCCCAUCGGAUUAAGAUCAAGAACU (((((((...((((.....((((.........((((......))))......))))....))))..)))))))....... ( -16.16, z-score = -3.12, R) >droSec1.super_9 1690458 80 - 3197100 GAUCUUACAGCCGAAUUCAGAAUUUAACACACCUCAAAGUCCUGAGCUACCUAUCCCUCAUCGGAUUAAGAUCAAGAACU (((((((...((((.(((((.((((...........)))).)))))..............))))..)))))))....... ( -13.66, z-score = -1.76, R) >droYak2.chr2R 15851507 80 - 21139217 GAUCUUACAGCCGAAUUCAGAAUUUAACACACCUCUAAGUCCUGAGAUGCCCAUUCCCCAUCGGACUAAGAUCAACAUCU (((((((...((((..((((.(((((.........))))).))))((.......))....))))..)))))))....... ( -17.00, z-score = -3.21, R) >droEre2.scaffold_4845 15024943 80 + 22589142 GAUCUUACAGCCGAAUUCAGAAUUUAACACACCUCAAAGUCCUGAGAUACCUAUUCCCCAUCGGUCUAAGAUCAACAUCU (((((((..(((((.....((((.........((((......))))......))))....))))).)))))))....... ( -16.86, z-score = -3.55, R) >droPer1.super_2 7193060 77 - 9036312 GACAUCUGAGCAGAUAAAAGAACCUC-UAUACC--AAAUCUCCAAGAUUUUCAUAUACCCUCAUAUUUCGUCCCAUAAUU (((((((....))))...........-((((..--(((((.....)))))...))))............)))........ ( -6.00, z-score = -0.80, R) >consensus GAUCUUACAGCCGAAUUCAGAAUUUAACACACCUCAAAGUCCUGAGAUACCUAUUCCCCAUCGGAUUAAGAUCAACAACU (((((((...((((.(((((.....................)))))..............))))..)))))))....... ( -5.86 = -7.86 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:43:28 2011