| Sequence ID | dm3.chr2R |
|---|---|
| Location | 18,378,819 – 18,378,933 |
| Length | 114 |
| Max. P | 0.763554 |
| Location | 18,378,819 – 18,378,933 |
|---|---|
| Length | 114 |
| Sequences | 12 |
| Columns | 121 |
| Reading direction | forward |
| Mean pairwise identity | 69.52 |
| Shannon entropy | 0.67426 |
| G+C content | 0.48415 |
| Mean single sequence MFE | -32.58 |
| Consensus MFE | -10.62 |
| Energy contribution | -10.26 |
| Covariance contribution | -0.37 |
| Combinations/Pair | 1.71 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.33 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.763554 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 18378819 114 + 21146708 ---ACGAUGAUGAAGAGGAGCGAGAGCCG---GUGAACAAAAUAAGUCUCACCUGGCUGAUUCGCAAUAUACGCUUCCUCAUUAACAAGGAAGUCGCAAAGGCACCUCACGACAUCAGCA- ---..((((.((..((((.((((((((((---((((((.......)).))))).))))..))))).......(((((((........))))))).((....)).)))).)).))))....- ( -38.20, z-score = -3.53, R) >anoGam1.chr2L 40734289 102 - 48795086 ---------------AGGAAAAGGCGUCA---UCGAAAAGGAUCAAUCUGCACUGGCUGGUGCGCCGGGUGCGAUAUGUAGUGCAGGGCGAAAUCUUCAAGACGCCUCAC-AUAUUUACAC ---------------......(((((((.---((......))((..(((((((((.....(((((...))))).....)))))))))..)).........)))))))...-.......... ( -30.60, z-score = -1.00, R) >droGri2.scaffold_15245 10441843 117 - 18325388 ---ACGCAGAACAAUCCGAACAGUUGCCACCUGCCAGCAAAAUAAAUCUCAAUUGGCUGGUGCGCAACAUACGCAUACUGAUAAACAAGGAGGUGUCCAAGGCACCGCAUGACACCACAA- ---..((.......(((.....(((((((((.(((((...............))))).)))).)))))..........((.....)).)))(((((.....)))))))............- ( -32.26, z-score = -1.77, R) >droMoj3.scaffold_6496 19723969 114 + 26866924 ---AUGUUGCGAAAAAAGAGGAAGUACCA---GCUGGAAAAAUCAAUCUCAAUUGGUUGGUACGCAAUAUACGCUUCCUAAUCAACAAGGAGGUAUCCAAGGCACCACACGACACCAGCA- ---.(((((.(........(((.((((((---((..(...............)..)))))))).........(((((((........))))))).)))..(....).).)))))......- ( -28.36, z-score = -1.76, R) >droVir3.scaffold_12875 12481058 114 + 20611582 ---UGGGAGAUCAGAGCGAGCAAAUACCA---GCUGGCAAAAUCAAUCUCAACUGGCUGGUGCGCAACAUUCGCAUCCUAAUUAACAAGGAGUUGUCCAAGGCGCCACACGACACCAGCA- ---(((((.......((.(((........---))).))........)))))....((((((((((......((..((((........))))..))......))))........)))))).- ( -30.96, z-score = -0.70, R) >droWil1.scaffold_180700 2360354 114 - 6630534 ---AGGACGAUGAAGUGAACGAAACACAG---ACUAAUAAAAUCAAUCUCUAUUGGCUGGUUAGGAAUAUACGUUUCCUAAUUAACAGGGAGGUGGCCAAGGCUCCACACGAUACCAGCU- ---.((........(((.......)))..---.........(((.((((((.(((..((((((((((.......)))))))))).)))))))))(((....)))......))).))....- ( -24.60, z-score = -0.38, R) >dp4.chr3 12479099 114 - 19779522 ---AGGCGGAGGAGCGAGAGCGGGGGCCG---GCUAACAAAAUCAACCUCAAUUGGCUGGUGCGAAACAUACGCUUUUUGGUGAACAAGGAAGUGACCAAGGCACCGCACGACACCAGCA- ---.....((((.((....))(..((...---.))..)........)))).....(((((((((.......((((((((.(....).))))))))......((...)).)).))))))).- ( -35.10, z-score = -0.59, R) >droAna3.scaffold_13266 12517292 117 - 19884421 AUGCGGAUGACGAAGAAGAACAGAGUCUU---ACCAACAAAAUACAUCUUAACUGGCUAGUGAGAAAUAUUCGUUUCCUGGUCAACAAGGAAGUGGCCAAGGCGCCACAUGACACAAGCA- .(((((..(((.............)))..---.))..((.......((((...(((((((.((((........)))))))))))...)))).(((((......))))).))......)))- ( -26.52, z-score = -0.45, R) >droEre2.scaffold_4845 15021720 114 - 22589142 ---ACGAGGCUGAUGAGGAGCUAGAGCCG---GUGAACAAAAUAAAUCUGAACUGGCUGGUUCGAAAUAUACGUUUCCUUAUUAACAAGGAAGUCGCUAAGGCGCCGCACGACAUCAGCA- ---.....(((((((..(((((..(((((---((.................))))))))))))........(((((((((......))))))(.(((....))).)..))).))))))).- ( -36.23, z-score = -2.44, R) >droYak2.chr2R 15848336 114 + 21139217 ---ACGAUGAUGAAGAAGAGGUGGAGCCG---GUGAACAAAAUAAAUCUAAACUGGCUGAUUCGCAAUAUUCGUUUCCUUAUUAACAAGGAAGUCGCGAAGGCGCCUCACGACAUCAGCA- ---..(.(((((..(..(((((..(((((---((.................))))))).....((....(((((((((((......))))))...))))).))))))).)..))))).).- ( -34.23, z-score = -2.48, R) >droSec1.super_9 1687222 114 + 3197100 ---ACGAUGACGAAGAGGAGCGAGAGCCG---GUCAACAAAAUAAGUCUCACCUGGCUGGUUCGCAAUAUACGCUUCCUCAUUAACAAGGAAGUCGCAAAGGCGCCUCACGACAUCAGCA- ---..((((.((..((((.(((.((((((---((((.................)))))))))).)......((((((((........)))))).)).....)).)))).)).))))....- ( -37.53, z-score = -2.73, R) >droSim1.chr2R 16971622 114 + 19596830 ---ACGAUGACGAAGAGGAGCGAGAGCCG---GUGAACAAAAUAAGUCUCACCUGGCUGGUUCGCAAUAUACGCUUCCUCAUUAACAAGGAAGUUGCCAAGGCGCCCCACGACAUCAGCA- ---..((((.((..(.((.((((((((((---((((((.......)).))))).))))..))))).......(((((((........))))))).((....)).)))..)).))))....- ( -36.40, z-score = -2.17, R) >consensus ___ACGAUGAUGAAGAGGAGCAAGAGCCG___GCGAACAAAAUAAAUCUCAACUGGCUGGUUCGCAAUAUACGCUUCCUAAUUAACAAGGAAGUCGCCAAGGCGCCACACGACACCAGCA_ .......................................................((((((...........(((((((........)))))))......(....).......)))))).. (-10.62 = -10.26 + -0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:43:27 2011