| Sequence ID | dm3.chr2R |
|---|---|
| Location | 18,364,914 – 18,365,018 |
| Length | 104 |
| Max. P | 0.688485 |
| Location | 18,364,914 – 18,365,018 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 71.94 |
| Shannon entropy | 0.49146 |
| G+C content | 0.54430 |
| Mean single sequence MFE | -28.46 |
| Consensus MFE | -15.06 |
| Energy contribution | -15.46 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.688485 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 18364914 104 - 21146708 GUCGAUUUGCGAGUU------CGAUUGCGACUCCCAGCGGAACCGUUGAGAUUGUUCCGCUGUUUCUCGGCU-UCGUUAUGACCCCUAAUGUCUGUGAGCCCUGACCCCUG------ (((((.((((((...------...)))))).)).(((((((((.((....)).)))))))))......((((-(......(((.......)))...)))))..))).....------ ( -30.10, z-score = -2.56, R) >droAna3.scaffold_13266 12497472 105 + 19884421 GUCGAUAUGCGAUUGCAAUGGCGAUUGCUAUUCCCAGUGGUAUCGUUCAGAUU--------GUUUCUUGCCA-CCGUUACGACUCCUAAUGCCCGUGUCCUGGGGCUCGACAGG--- (((((...((((((((....))))))))...((((((.(..((((((..((((--------((..(......-..)..)))).))..))))...))..))))))).)))))...--- ( -31.10, z-score = -0.71, R) >droYak2.chr2R 15834293 117 - 21139217 GUCGAUUUGCGAGUUCGAUUGCGAUUGCGACUCCCAGCGGAACCGUUGAGAUUGUUCCUCGGUUUCUCGGCUCCCGUUAUGACCCCUAAUGCCCGUGACCCCUGACCCCUGGCCCCA ((((..((((((......))))))...))))..((((.(((.(((..(((((((.....))))))).))).))).((((((............)))))).........))))..... ( -32.70, z-score = -1.55, R) >droSec1.super_9 1673241 84 - 3197100 GUCGAUUUGCGAGUU------CGAUUGCGACUCCCAGCGGAACCGUUGAGAUUGUUCCGCUGUUUCUCGGCU-UCGUUAUGACCCGUUAUG-------------------------- (((((.((((((...------...))))))....(((((((((.((....)).)))))))))....))))).-..................-------------------------- ( -25.20, z-score = -1.54, R) >droSim1.chr2R_random 2783152 97 - 2996586 GUCGAUUUGCGAGUU------CGAUUGCGACUCCCAGCGGAACCGUUGAGAUUGUUCCGAUGUUUCUCGGCU-UCGUUAUGACCCCUAAUGUCCGUGACCCCUG------------- (((((...((((((.------((....))))))....((((((.((....)).))))))..))...))))).-..((((((((.......)).)))))).....------------- ( -23.20, z-score = -0.56, R) >consensus GUCGAUUUGCGAGUU______CGAUUGCGACUCCCAGCGGAACCGUUGAGAUUGUUCCGCUGUUUCUCGGCU_UCGUUAUGACCCCUAAUGCCCGUGACCCCUG_C_C_________ (((((.((((((............)))))).))..(((((....(((((((.............)))))))..)))))..))).................................. (-15.06 = -15.46 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:43:26 2011