| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,659,014 – 3,659,064 |
| Length | 50 |
| Max. P | 0.748303 |
| Location | 3,659,014 – 3,659,064 |
|---|---|
| Length | 50 |
| Sequences | 8 |
| Columns | 50 |
| Reading direction | forward |
| Mean pairwise identity | 96.93 |
| Shannon entropy | 0.05955 |
| G+C content | 0.27250 |
| Mean single sequence MFE | -5.12 |
| Consensus MFE | -5.05 |
| Energy contribution | -4.87 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.99 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.748303 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3659014 50 + 23011544 UUCACUCUAAUUCUGUUUAGCCAUUUAUUUUAUUUAGGCAUUUCAUAGAA ..........((((((...(((..............))).....)))))) ( -4.94, z-score = -1.10, R) >droSim1.chr2L 3613570 50 + 22036055 UUCACUCUAAUUCUGUUUAGCCAUUUAUUUUAUUUAGGCAUUUCAUAGAA ..........((((((...(((..............))).....)))))) ( -4.94, z-score = -1.10, R) >droSec1.super_5 1754636 50 + 5866729 UUCACUCUAAUUCUGUUUAGCCAUUUAUUUUAUUUAGGCAUUUCAUAGAA ..........((((((...(((..............))).....)))))) ( -4.94, z-score = -1.10, R) >droYak2.chr2L 3651739 50 + 22324452 UGCACCGUAAUUCUGUUUAGCCAUUUAUUUUAUUUAGGCAUUUCAUAGAA ..........((((((...(((..............))).....)))))) ( -4.94, z-score = -0.29, R) >droEre2.scaffold_4929 3693151 50 + 26641161 UUCACCGUAAUUCUGUUUAGCCAUUUAUUUUAUUUAGGCAUUUCAUAGAA ..........((((((...(((..............))).....)))))) ( -4.94, z-score = -1.09, R) >droAna3.scaffold_12916 5709460 50 + 16180835 UUCACUCUAAUUCUGUUUAGCCAUUUAUUUUAUUUAGGCAUUUCAUAGAA ..........((((((...(((..............))).....)))))) ( -4.94, z-score = -1.10, R) >dp4.chr4_group3 6618488 50 - 11692001 UUCACUCUAAUUCUGUUUAGCCAUUUAUUUUAUUUAGGCAUUUCAUAGAG ....(((((....((....(((..............)))....))))))) ( -5.64, z-score = -1.56, R) >droPer1.super_1 3717987 50 - 10282868 UUCACUCUAAUUCUGUUUAGCCAUUUAUUUUAUUUAGGCAUUUCAUAGAG ....(((((....((....(((..............)))....))))))) ( -5.64, z-score = -1.56, R) >consensus UUCACUCUAAUUCUGUUUAGCCAUUUAUUUUAUUUAGGCAUUUCAUAGAA ..........((((((...(((..............))).....)))))) ( -5.05 = -4.87 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:14:21 2011