Sequence ID | dm3.chr2R |
---|---|
Location | 18,355,011 – 18,355,070 |
Length | 59 |
Max. P | 0.957246 |
Location | 18,355,011 – 18,355,070 |
---|---|
Length | 59 |
Sequences | 7 |
Columns | 62 |
Reading direction | reverse |
Mean pairwise identity | 72.71 |
Shannon entropy | 0.53501 |
G+C content | 0.33848 |
Mean single sequence MFE | -6.59 |
Consensus MFE | -4.13 |
Energy contribution | -3.21 |
Covariance contribution | -0.92 |
Combinations/Pair | 2.00 |
Mean z-score | -1.43 |
Structure conservation index | 0.63 |
Background model | dinucleotide |
Decision model | sequence based alignment quality |
SVM decision value | 1.64 |
SVM RNA-class probability | 0.957246 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 18355011 59 - 21146708 ACUACACUUCCAAAACUAUUUGC-CAUGACUUUCGCAAAUUUGACUUUAAUUAAAGUCGU-- .................((((((-.(......).))))))..((((((....))))))..-- ( -7.90, z-score = -2.37, R) >droSim1.chr2R 16954882 59 - 19596830 ACUACACUUCCAAAACUAUUCGC-CAUGACUUUCGCAAAUUUGACUUUAAUUAAAGUCGU-- .......................-..................((((((....))))))..-- ( -5.10, z-score = -0.97, R) >droSec1.super_9 1663376 59 - 3197100 ACUACACUUCCAAAACUAUUCCC-CAUGACUUUCGCAAAUUUGACUUUAAUUAAAGUCGU-- .......................-..................((((((....))))))..-- ( -5.10, z-score = -1.73, R) >droYak2.chr2R 15824314 59 - 21139217 ACUACACUUCCAAAACUAUUCGC-CAUGACUUUCGCAAAUUUGACUUUAAUUAAAGUCGU-- .......................-..................((((((....))))))..-- ( -5.10, z-score = -0.97, R) >droEre2.scaffold_4845 14997706 59 + 22589142 ACUACACUUCCAAAACUAUUCGC-CAUGACUUUCGCAAAUUUGACUUUAAUUAAAGUCGU-- .......................-..................((((((....))))))..-- ( -5.10, z-score = -0.97, R) >droAna3.scaffold_13266 12487908 59 + 19884421 UCUACACUUCGGAAACUAUUCUC-UAUAAUUUCCACUAAUUUUUCAACAAAUGAAGAAAG-- ..........(((((.(((....-.))).))))).....(((((((.....)))))))..-- ( -8.90, z-score = -3.61, R) >droMoj3.scaffold_6496 13116384 62 - 26866924 ACUAUGACUCGACAGCUAUUGGCGUGCCAUUAACUUUCGCGCUUGAGAAAAUUUAAAGAUGU .......(((((..((.....))((((...........)))))))))............... ( -8.90, z-score = 0.60, R) >consensus ACUACACUUCCAAAACUAUUCGC_CAUGACUUUCGCAAAUUUGACUUUAAUUAAAGUCGU__ ..........................................((((((....)))))).... ( -4.13 = -3.21 + -0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:43:23 2011