Locus 5179

Sequence ID dm3.chr2R
Location 18,355,011 – 18,355,070
Length 59
Max. P 0.957246
window7109

overview

Window 9

Location 18,355,011 – 18,355,070
Length 59
Sequences 7
Columns 62
Reading direction reverse
Mean pairwise identity 72.71
Shannon entropy 0.53501
G+C content 0.33848
Mean single sequence MFE -6.59
Consensus MFE -4.13
Energy contribution -3.21
Covariance contribution -0.92
Combinations/Pair 2.00
Mean z-score -1.43
Structure conservation index 0.63
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.64
SVM RNA-class probability 0.957246
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 18355011 59 - 21146708
ACUACACUUCCAAAACUAUUUGC-CAUGACUUUCGCAAAUUUGACUUUAAUUAAAGUCGU--
.................((((((-.(......).))))))..((((((....))))))..-- (  -7.90, z-score =  -2.37, R)
>droSim1.chr2R 16954882 59 - 19596830
ACUACACUUCCAAAACUAUUCGC-CAUGACUUUCGCAAAUUUGACUUUAAUUAAAGUCGU--
.......................-..................((((((....))))))..-- (  -5.10, z-score =  -0.97, R)
>droSec1.super_9 1663376 59 - 3197100
ACUACACUUCCAAAACUAUUCCC-CAUGACUUUCGCAAAUUUGACUUUAAUUAAAGUCGU--
.......................-..................((((((....))))))..-- (  -5.10, z-score =  -1.73, R)
>droYak2.chr2R 15824314 59 - 21139217
ACUACACUUCCAAAACUAUUCGC-CAUGACUUUCGCAAAUUUGACUUUAAUUAAAGUCGU--
.......................-..................((((((....))))))..-- (  -5.10, z-score =  -0.97, R)
>droEre2.scaffold_4845 14997706 59 + 22589142
ACUACACUUCCAAAACUAUUCGC-CAUGACUUUCGCAAAUUUGACUUUAAUUAAAGUCGU--
.......................-..................((((((....))))))..-- (  -5.10, z-score =  -0.97, R)
>droAna3.scaffold_13266 12487908 59 + 19884421
UCUACACUUCGGAAACUAUUCUC-UAUAAUUUCCACUAAUUUUUCAACAAAUGAAGAAAG--
..........(((((.(((....-.))).))))).....(((((((.....)))))))..-- (  -8.90, z-score =  -3.61, R)
>droMoj3.scaffold_6496 13116384 62 - 26866924
ACUAUGACUCGACAGCUAUUGGCGUGCCAUUAACUUUCGCGCUUGAGAAAAUUUAAAGAUGU
.......(((((..((.....))((((...........)))))))))............... (  -8.90, z-score =   0.60, R)
>consensus
ACUACACUUCCAAAACUAUUCGC_CAUGACUUUCGCAAAUUUGACUUUAAUUAAAGUCGU__
..........................................((((((....)))))).... ( -4.13 =  -3.21 +  -0.92) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:43:23 2011