| Sequence ID | dm3.chr2R |
|---|---|
| Location | 18,343,970 – 18,344,063 |
| Length | 93 |
| Max. P | 0.635606 |
| Location | 18,343,970 – 18,344,063 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 81.81 |
| Shannon entropy | 0.30795 |
| G+C content | 0.46177 |
| Mean single sequence MFE | -30.05 |
| Consensus MFE | -12.74 |
| Energy contribution | -14.38 |
| Covariance contribution | 1.64 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.71 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.635606 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 18343970 93 - 21146708 ---------------------GUCCGUGGAC-UGUGCCAACCCAAAUCUGCAGAUAGCCAUUAAAGUGUCGUUGAUUAAUCGAUGUGG--CUAUCAAAGCCGCAUAAUCGGAUAUCC ---------------------(((((..((.-..((......))..))..).(((((((((......((((.........))))))))--)))))..............)))).... ( -23.20, z-score = -1.31, R) >droSim1.chr2R 16944070 93 - 19596830 ---------------------GUCCGUGGAC-UGUGCCGUCCAAAAUCGGCAGAUAGCCAUUAAAGUGUCGUUGAUUAAUCGAUGUGG--CUAUCAAAGCCGCAUAAUCGGAUAUCC ---------------------((((((((((-......)))))....((((.(((((((((......((((.........))))))))--)))))...))))......))))).... ( -32.20, z-score = -3.77, R) >droSec1.super_9 1652572 93 - 3197100 ---------------------GUCCGUGAAC-UGUGCCGUCCAAAAUCGGCAGAUAGCCAUUAAAGUGUCGUUGAUUAAUCGAUGUGG--CUAUCAAAGCCGCAUAAUCGGAUAUCC ---------------------(((((.....-(((((((........)))).(((((((((......((((.........))))))))--)))))......)))....))))).... ( -28.90, z-score = -3.22, R) >droYak2.chr2R 15812592 115 - 21139217 GUCCAUGGACUGUGGACCAUGGAACAUGUCCAUGUGCCGUCCAAAAUCGGCAGAUAGCCAUUAAAGUGUCGUUGAUUAAUCGAUGUGG--CUAUCAAAGCCGCAUAAUCGGAUAUCC ((((.(((((...((..((((((.....))))))..)))))))....((((.(((((((((......((((.........))))))))--)))))...)))).......)))).... ( -41.10, z-score = -3.51, R) >droEre2.scaffold_4845 14987222 93 + 22589142 ---------------------GUCCAUGGAC-UGUGCCGUCCCAAAUCGGCAGAUAGCCAUUAAAGUGUCGUUGAUUAAUCGAUGUGG--CUAUCAAAGCCGCAUAAUCUGAUAUCC ---------------------....((((.(-(((((((........)))))..)))))))....((((((..(((((.....(((((--((.....)))))))))))))))))).. ( -27.00, z-score = -2.52, R) >droAna3.scaffold_13266 12475338 93 + 19884421 -------------------UGGAUUGUGC---AGAGCGG--CGGAAUCGGCAGAAAGCCAUUAUGGUGUCAUUGAUUAAUCGUUGUGGUUCUAUCAAAGCUGCAUAAUCGGAUAUAC -------------------..((((((((---((...(.--.(((((((((.....)))((.(((((...........))))).))))))))..)....))))))))))........ ( -27.90, z-score = -1.94, R) >consensus _____________________GUCCGUGGAC_UGUGCCGUCCAAAAUCGGCAGAUAGCCAUUAAAGUGUCGUUGAUUAAUCGAUGUGG__CUAUCAAAGCCGCAUAAUCGGAUAUCC .....................(((((........(((((........)))))((((((((.........((((((....)))))))))..))))).............))))).... (-12.74 = -14.38 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:43:22 2011