| Sequence ID | dm3.chr2R |
|---|---|
| Location | 18,333,389 – 18,333,485 |
| Length | 96 |
| Max. P | 0.527774 |
| Location | 18,333,389 – 18,333,485 |
|---|---|
| Length | 96 |
| Sequences | 7 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 76.26 |
| Shannon entropy | 0.43270 |
| G+C content | 0.43888 |
| Mean single sequence MFE | -26.39 |
| Consensus MFE | -14.73 |
| Energy contribution | -13.81 |
| Covariance contribution | -0.91 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.527774 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 18333389 96 + 21146708 GACUCGGGG----AUCCCAGCUUCCCCUCCGUAAACAAAUGCUUAAAUGCUUUUUGUAGAGCAAAAUUUAUGCAAAUGCCAACUGCAGAGGUGGUUGGAU--------- .....((((----(........)))))............(((.((((((((((....))))))...)))).)))....(((((..(....)..)))))..--------- ( -27.90, z-score = -1.57, R) >droPer1.super_4 4255376 108 + 7162766 -AAUCCCACCAUCCUUUGCCAUCCUCUCCGCUAAACAAAUGCUUAAAUGCUUUUUGUAGAGCGAAAUUUAUGCAAAUGUCAGUCGCAGAAGGGGUUGGGUGGAAUUUUG -.......((((((...(((..(((((.((((..(((..(((.((((((((((....)))))...))))).)))..))).)).)).)).)))))).))))))....... ( -28.50, z-score = -1.33, R) >dp4.chr3 8934358 108 + 19779522 -AAUCCCACCAUCCUUUGCCAUCCUCUCCGCUAAACAAAUGCUUAAAUGCUUUUUGUAGAGCGAAAUUUAUGCAAAUGUCAGUCGCAGAAGGGGUUGGGUGGAAUUUUG -.......((((((...(((..(((((.((((..(((..(((.((((((((((....)))))...))))).)))..))).)).)).)).)))))).))))))....... ( -28.50, z-score = -1.33, R) >droAna3.scaffold_13266 12463310 89 - 19884421 GACUCAGG-----AUC---UCUCCCCCUGCCAAAACAAAUGCUUAAAUGCUUUUUGUAGGGCGAAAUUUAUGCAAAUGUCAGCUACAGAGGUGGAUA------------ ........-----...---..(((.((((((...(((((.((......))..)))))..))).........((........)).....))).)))..------------ ( -17.90, z-score = 0.52, R) >droEre2.scaffold_4845 14976834 100 - 22589142 GACUCGGAACCCAACCCCUGCCUCCCCUCCCUAAACAAAUGCUUAAAUGCUUUUUGUAGAGCAAAAUUUAUGCAAAUGCCAACUGCAGAGGUGGUUGGAU--------- ..........((((((...(((((...............(((.((((((((((....))))))...)))).)))..(((.....))))))))))))))..--------- ( -26.10, z-score = -2.44, R) >droSec1.super_9 1641955 96 + 3197100 GACUCGGGG----AUCCCAUCUUCCCCUCCCUAAACAAAUGCUUAAAUGCUUUUUGUAGAGCAAAAUUUAUGCAAAUGCCAACUGCAGAGGUGGUUGGAU--------- .....((((----(........)))))............(((.((((((((((....))))))...)))).)))....(((((..(....)..)))))..--------- ( -27.90, z-score = -1.97, R) >droSim1.chr2R 16933554 96 + 19596830 GACUCGGGG----AUCCCAGCUUCCCCUCCCUAAACAAAUGCUUAAAUGCUUUUUGUAGAGCAAAAUUUAUGCAAAUGCCAACUGCAGAGGUGGUUGGAU--------- .....((((----(........)))))............(((.((((((((((....))))))...)))).)))....(((((..(....)..)))))..--------- ( -27.90, z-score = -1.58, R) >consensus GACUCGGGG____AUCCCAGCUUCCCCUCCCUAAACAAAUGCUUAAAUGCUUUUUGUAGAGCAAAAUUUAUGCAAAUGCCAACUGCAGAGGUGGUUGGAU_________ .......................((((((..........(((.((((((((((....))))))...)))).)))..(((.....))))))).))............... (-14.73 = -13.81 + -0.91)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:43:21 2011