| Sequence ID | dm3.chr2R |
|---|---|
| Location | 18,309,725 – 18,309,842 |
| Length | 117 |
| Max. P | 0.567653 |
| Location | 18,309,725 – 18,309,842 |
|---|---|
| Length | 117 |
| Sequences | 7 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 70.53 |
| Shannon entropy | 0.59233 |
| G+C content | 0.52503 |
| Mean single sequence MFE | -39.57 |
| Consensus MFE | -14.86 |
| Energy contribution | -15.24 |
| Covariance contribution | 0.38 |
| Combinations/Pair | 1.70 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.567653 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 18309725 117 + 21146708 CAGAUUAAGAGGUCCAGUGUCGCUGAGCAAGAAAAGUUGGGCACACAGGACCGGAAGCAUUGCCUGGCUAAACAACGGCAUCAGAGCGAGCUGGCUUGUCGGGCACAGCUUCUGAAG ..........(((((.((((.(((.(((.......))).))))))).)))))((((((..((((((((.......((((.((.....))))))....))))))))..)))))).... ( -48.00, z-score = -3.41, R) >anoGam1.chr2R 18980990 117 - 62725911 CGCCUCAAACUGCAGGACCGUUCCCUGCAAAGCAAGCUGCAGUCAAUCGAUGGGCAAAAGAUUGAGCUCGCCGAAAAGCAGAAACGCGAACGGGAGCUUCAGAUCGAGCGAGGCAAA .(((((....((((((.......))))))......(((((.(((....)))..))....((((((((((.(((....((......))...)))))))))..)))).))))))))... ( -43.90, z-score = -2.35, R) >droAna3.scaffold_13266 12438878 117 - 19884421 CAGCUAAAGAAGUCCAGUGGAAUUGUGAAGGAUAGGCUUGCCACGCACGAUAAAAAACAGGUUCUGGCCAAGCAACAACAUCAGAGUGAACAGGCAUGCAAAGCCCAGCUGCUGAGG (((((...........((...(((.(((.(.....((((((((.(.((............)).)))).))))).....).))).)))..)).(((.......))).)))))...... ( -25.20, z-score = 1.60, R) >droEre2.scaffold_4845 12449910 117 + 22589142 CAGAUUAGGAAGUCCAGAGUCUCUGAGCAAGAAAAGUUGGGCACCCAGGACCGAAAGCAUUGUCUGGCUAAACAGCGGCAUCAGAGCGAGCUGGCUUGUCAAGCACAGCUUCUGAAG ((((...((....))...(.((((((((.......((((.....(((((..(....).....))))).....)))).)).))))))).((((((((.....))).)))))))))... ( -34.40, z-score = 0.27, R) >droYak2.chr2R 18059047 117 + 21139217 CAGAUUAAGAGAUCUAAAGUCUCUGAGCAAGAAAAGUUGGGCACACAGGACCGAAAGCAUUGCCUGGCUAAGCAACGGCAUCAAAGCGAGCUGGCUUGUCGAGCACAGCUUCUAAAG .......((((((.....))))))..((......(((..((((........(....)...))))..)))..((....))......))((((((((((...)))).))))))...... ( -31.40, z-score = 0.12, R) >droSec1.super_9 1617788 117 + 3197100 CAGAUUAAAAGGUCCAGUGUCGCUGAGCAAGAUAAGUUGGGCAUACAGGACCGGAAGCAUUGCCUGGCUAAACAACGGCAUCAGAGCGAGCUGGCUUGUCGGGCACAGCUUCUGAAG ..........(((((.((((.(((.(((.......))).))))))).)))))((((((..((((((((.......((((.((.....))))))....))))))))..)))))).... ( -46.10, z-score = -3.26, R) >droSim1.chr2R 16909627 117 + 19596830 CAGAUUAAGAGGUCCAGUGUCGCUGAGCAAGAAAAGUUGGGCACACAGGACCGGAAGCAUUGCCUGGCUAAACAACGGCAUCAGAGCGAGCUGGCUUGUCGGGCACAGCUUCUGAAG ..........(((((.((((.(((.(((.......))).))))))).)))))((((((..((((((((.......((((.((.....))))))....))))))))..)))))).... ( -48.00, z-score = -3.41, R) >consensus CAGAUUAAGAGGUCCAGUGUCGCUGAGCAAGAAAAGUUGGGCACACAGGACCGGAAGCAUUGCCUGGCUAAACAACGGCAUCAGAGCGAGCUGGCUUGUCGGGCACAGCUUCUGAAG ((((....((.((((((.....))).........(((..((((.................))))..))).......))).))......((((((((.....))).)))))))))... (-14.86 = -15.24 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:43:15 2011