| Sequence ID | dm3.chr2R |
|---|---|
| Location | 18,272,107 – 18,272,200 |
| Length | 93 |
| Max. P | 0.968688 |
| Location | 18,272,107 – 18,272,200 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 65.37 |
| Shannon entropy | 0.63984 |
| G+C content | 0.34492 |
| Mean single sequence MFE | -17.75 |
| Consensus MFE | -8.69 |
| Energy contribution | -9.33 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.64 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.80 |
| SVM RNA-class probability | 0.968688 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 18272107 93 - 21146708 CAACUAGGUUGUUUUCUACUUGAUACCCUUUAAUGGGGUAUUUUAAUUUAUAAACCUGAUGCAAUAGAAAAAUUCUAAGCUGAGCGACUUCAA------ .....(((((((((.......((((((((.....))))))))..................((..((((.....)))).)).)))))))))...------ ( -18.50, z-score = -1.50, R) >droEre2.scaffold_4845 12412324 85 - 22589142 CAACUAGGCU-UGUUCUACUCGAUACUCUUUAAUGGUGUAUUUAAAAUGGCACACCUGCUGC-AUAGAAAACUUCUGAGCUGAAAAA------------ ....((((..-((((......(((((.((.....)).)))))......))))..))))..((-.((((.....)))).)).......------------ ( -13.10, z-score = 0.20, R) >droYak2.chr2R 18021172 76 - 21139217 CAACCAGGUUGUUUUCUACUCGAUACUCUUUUAUGGGGUAUCUAAACUUGUGCACCUGAUGC-AUAGAAAACUUCAA---------------------- ......((..(((((((....((((((((.....)))))))).......(((((.....)))-))))))))).))..---------------------- ( -19.90, z-score = -3.10, R) >droSec1.super_9 1580186 92 - 3197100 CAACUAAGUUGUUUUCUACUUGAUACCCUUUAAUGGGGUAUUUUAAUUUACAAACCUGAUGC-AUAGAAAAAUUCUAAGCUAAGCGACUUCAA------ .....(((((((((.......((((((((.....))))))))..................((-.((((.....)))).)).)))))))))...------ ( -20.50, z-score = -2.87, R) >droSim1.chr2R 16869976 92 - 19596830 CAACUAGGUUGUUUUCUACAUGAUACCCUUUAAUGGGGUAUUUUAACUUACAAACCUGAUGC-AUAGAAAAAUUCUUAGCUAAGCGACUUCAA------ ....((((((...........((((((((.....))))))))..........)))))).(((-.(((..((....))..))).))).......------ ( -19.10, z-score = -1.95, R) >droMoj3.scaffold_6496 13003033 98 - 26866924 CAGUUGGACU-UUCGAUUCUUGCGAGGGUCGAUAAGUGCAUAUGACAUUUUAAAUUUAACCGAAUGGAAAAACUCAAGGAAAAUCAAUAUACUUUUAAG ((..((.(((-(((((((((....)))))))).)))).))..))...............((....(......)....)).................... ( -15.40, z-score = 0.00, R) >consensus CAACUAGGUUGUUUUCUACUUGAUACCCUUUAAUGGGGUAUUUUAAAUUACAAACCUGAUGC_AUAGAAAAAUUCUAAGCUAAGCGACUUCAA______ ....((((((...........((((((((.....))))))))..........))))))......................................... ( -8.69 = -9.33 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:43:06 2011