| Sequence ID | dm3.chr2R |
|---|---|
| Location | 18,261,945 – 18,262,031 |
| Length | 86 |
| Max. P | 0.814071 |
| Location | 18,261,945 – 18,262,031 |
|---|---|
| Length | 86 |
| Sequences | 8 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 74.10 |
| Shannon entropy | 0.50534 |
| G+C content | 0.53047 |
| Mean single sequence MFE | -30.05 |
| Consensus MFE | -20.75 |
| Energy contribution | -21.41 |
| Covariance contribution | 0.66 |
| Combinations/Pair | 1.18 |
| Mean z-score | -0.94 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.814071 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 18261945 86 + 21146708 CUUUAAGUGUGAUUCAGUGUUGCGCUCGACAGCGCGGCAAAAUGUGCACGUGCUGCACCAGCCGCAAGGUAUUUCCCCGCAGUGGU------------- ......(((((......(((((((((....))))))))).....)))))..(((((....(((....)))........)))))...------------- ( -28.90, z-score = -0.36, R) >droSim1.chr2R 16859418 99 + 19596830 CUUUAAGUGUGAUUCAGUGUUGCGCUCGACAGCGCGGCAAAAUGUGCACGUGCUGCACCAGCCGCAAGGUAUUUCCCCGCAGUGAAUGUAAGCAGUGGU ......(((((......(((((((((....))))))))).....)))))..(((((....(((....)))........(((.....)))..)))))... ( -32.70, z-score = -0.37, R) >droSec1.super_9 1570025 99 + 3197100 CUUUAAGUGUGAUUCAGUGUUGCGCUCGACAGCGCGGCAAAAUGUGCACGUGCUGCACCAGCCGCAAGGUAUUUCCCCGCAGUGAAUGUAAGCAGUGGU ......(((((......(((((((((....))))))))).....)))))..(((((....(((....)))........(((.....)))..)))))... ( -32.70, z-score = -0.37, R) >droYak2.chr2R 18010650 96 + 21139217 CUUUAAGUGUGAUUCAGUGUUGCGCUCGACAGCGCGGCAAAAUGUGCACGUGCUGCACCAGCCGCAAGGUAUUUCCCCGCAGUGAAUGUGGACAGG--- ..(..((((..((.....))..))))..)((((((((((.....))).)))))))..((.(((....)))......(((((.....)))))...))--- ( -34.90, z-score = -1.16, R) >droEre2.scaffold_4845 12402067 96 + 22589142 CUUUAAGUGUGAUUCAGUGUUGCGCUCGACAGCGCGGCAAAAUGUGCACGUGCUGCACCAGCCGCAAGGUAUUUCCCCGCAGUGAGUGUGGGCAGG--- ..(..((((..((.....))..))))..)((((((((((.....))).)))))))..((.(((....))).....((((((.....))))))..))--- ( -36.60, z-score = -1.07, R) >droAna3.scaffold_13266 12389816 70 - 19884421 CUUUAAGUGUGAUUCAGUGUUGCGCUCGACAGCGCGGCAAAAUGUGCACGUGCUGCUACAGCCGCAAGGC----------------------------- ..(..((((..((.....))..))))..)((((((((((.....))).))))))).....(((....)))----------------------------- ( -28.20, z-score = -1.51, R) >dp4.chr3 4907386 79 - 19779522 CUUUAAGUGUGAUUCGUUGUUACGCUUGACAGCGCGGUAAAAUGUGCACGUGCUGCAAGAGC----AACUUUCCCCUGGGGGU---------------- ..(((((((((((.....)))))))))))((((((((((.....))).))))))).......----......(((....))).---------------- ( -27.60, z-score = -1.83, R) >droGri2.scaffold_15245 13307137 68 + 18325388 CUUUAAGUGUGAUUCGUUGUUACGCUUGACAGCGCGUUCAA---UGCA---GCAGUGCAAGCUGGAAUUUUUUU------------------------- ..(((((((((((.....)))))))))))((((((((...)---))).---((...))..))))..........------------------------- ( -18.80, z-score = -0.85, R) >consensus CUUUAAGUGUGAUUCAGUGUUGCGCUCGACAGCGCGGCAAAAUGUGCACGUGCUGCACCAGCCGCAAGGUAUUUCCCCGCAGUGA______________ .....((((((((.....)))))))).(.((((((((((.....))).))))))))....(((....)))............................. (-20.75 = -21.41 + 0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:43:06 2011