| Sequence ID | dm3.chr2R |
|---|---|
| Location | 18,251,874 – 18,251,965 |
| Length | 91 |
| Max. P | 0.975747 |
| Location | 18,251,874 – 18,251,965 |
|---|---|
| Length | 91 |
| Sequences | 8 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 72.83 |
| Shannon entropy | 0.54018 |
| G+C content | 0.55454 |
| Mean single sequence MFE | -35.59 |
| Consensus MFE | -21.92 |
| Energy contribution | -22.61 |
| Covariance contribution | 0.69 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.94 |
| SVM RNA-class probability | 0.975747 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 18251874 91 - 21146708 -----AGUGCGGCAUGCGAGCAACAGGUGGCGCUGUUGGAGGACACACCUCGAGU----GGGCU----GCAUAUUUUUCCUGCUUCCGCUCGUAUGUUUCACAU -----.(((..((((((((((.......(((.(..((.((((.....)))).)).----.))))----(((.........)))....))))))))))..))).. ( -37.00, z-score = -2.40, R) >droWil1.scaffold_180697 4036449 103 + 4168966 AAAUUGGCAGCGCA-ACAAGUUAGAUGGCUGACUUCAGGCUCACCUGAAUGGGUUGCAAAUAUUUUUACCAUCUUUAUAUGGCUUUUCCUCUCAUGCUGUGUGU ......((((((((-((..(((((....)))))((((((....))))))...)))))...........((((......)))).............))))).... ( -27.70, z-score = -1.11, R) >droSim1.chr2R 16849388 91 - 19596830 -----AGUGCGGCAUGCGAGCAACAGGUGGCGCUGCUGGAGGACACACCUCGAGU----GGGCU----GCAUAUUUUCCCUGCUUCCGCUCGUAUGUUUCACAU -----.(((..((((((((((.......(((.(..((.((((.....)))).)).----.))))----(((.........)))....))))))))))..))).. ( -39.80, z-score = -2.71, R) >droSec1.super_9 1559957 91 - 3197100 -----AGUGCGGCAUGCGAGCAACAGGUGGCGCUGCUGGAGGACACACCUCGAUU----GGGCU----GCAUAUUUUCCCUGCUUCCGCUCGUAUGUUUCACAU -----.(((..((((((((((...(((((...((......))...))))).....----.((..----(((.........)))..))))))))))))..))).. ( -34.40, z-score = -1.50, R) >droYak2.chr2R 17999991 91 - 21139217 -----AGUGCGGCAUGCGAGCAACAGGUGGCGCUGCUGGAGGACACACCUCGAGU----GGGCU----GCAUAUUUUCCCUGCUUCCGCUCGUAUGUUUCACAU -----.(((..((((((((((.......(((.(..((.((((.....)))).)).----.))))----(((.........)))....))))))))))..))).. ( -39.80, z-score = -2.71, R) >droEre2.scaffold_4845 12391961 91 - 22589142 -----AGUGCGGCAUGCGAGCAACAGGUGGCGCUGCUGGAGGACACACCUCGUGU----GGGCU----GCAUAUUUUCCCUGCUUCCGUUCGUAUGUUUCGCAU -----.(((((((((((((((..(((......)))..(((((((((.....))))----(((..----.........)))..)))))))))))))))..))))) ( -32.90, z-score = -0.37, R) >droAna3.scaffold_13266 12379466 95 + 19884421 -AGUGCGAGUGGCAUCCGAGCAACAGGUCCCUCUGCCAGAGGACACACCUCAAGU----GGGCU----GCAUAUUUUCCCGGCUUCCGCUCGUAUGUUUCGCAU -.(((((((..((((.(((((...((((.((((.....))))....))))...(.----.((((----(..........)))))..)))))).))))))))))) ( -34.00, z-score = -1.65, R) >dp4.chr3 4898907 99 + 19779522 AAUGCGGCGGCGAUGGCAAGCAACAGGUGGGGCCGGAGGA-CACACACCUGGAGCCUGGAGGCU----GCAUACUUGCCCGGCUUCCGCUCGUAUGUUUCGCAU .........((((.((((.((..((((((..(((...)).-)...))))))((((..(((((((----(((....)))..))))))))))))).)))))))).. ( -39.10, z-score = -0.31, R) >consensus _____AGUGCGGCAUGCGAGCAACAGGUGGCGCUGCUGGAGGACACACCUCGAGU____GGGCU____GCAUAUUUUCCCUGCUUCCGCUCGUAUGUUUCACAU ......(((..((((((((((...(((((...((......))...))))).........(((...............))).......))))))))))..))).. (-21.92 = -22.61 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:42:59 2011