| Sequence ID | dm3.chr2R |
|---|---|
| Location | 18,248,875 – 18,248,985 |
| Length | 110 |
| Max. P | 0.810828 |
| Location | 18,248,875 – 18,248,985 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 90.95 |
| Shannon entropy | 0.15593 |
| G+C content | 0.32316 |
| Mean single sequence MFE | -22.84 |
| Consensus MFE | -20.44 |
| Energy contribution | -20.32 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.810828 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 18248875 110 - 21146708 CAUAAAUGAAUAGCAAGACGGGUUCUUUGUUUGUCGAUUGUUUGGAUUCUCAAGGCAUUCAAUUGCCCGUUUUACUAUGCAAA----UAAGUUAUUUUCUUCUCAAUAAUUCAA ......((.((((.(((((((((...(((..((((....(........)....))))..)))..))))))))).)))).))..----..(((((((........)))))))... ( -24.30, z-score = -2.15, R) >droSim1.chr2R 16846234 110 - 19596830 CAUAAAUGAAUAGCAAGACGGGUUCUUUGUUUGUCGAUUGUUUGGGUUCUCAAGGCAUUCAAUUGCCCGUUUUACUAUGCAAA----UAAGAUAUUUUCUUCUCAAUAAUUCAA ......((.((((.(((((((((...(((..((((....(........)....))))..)))..))))))))).)))).))..----.((((.....))))............. ( -24.40, z-score = -1.91, R) >droSec1.super_9 1556853 110 - 3197100 CAUAAAUGAAUAGCAAAACGGGUUCUUUGUUUGUCGAUUGUUUGGGUUCUCAAGGCAUUCAAUUGCCCGUUUUACUAUGCAAA----UAAGAUAUUUUCUUUUCAAUAAUUCAA ......((.((((.(((((((((...(((..((((....(........)....))))..)))..))))))))).)))).))..----.((((.....))))............. ( -24.30, z-score = -2.24, R) >droYak2.chr2R 17996660 110 - 21139217 CAUAAAUGAAUAGCAAAACAGGUUCUUUGUUUGUCGAUUGUUUGGCCUCUCAAGGCAUUCAAUUGCCCCUUUUAUUAAGUAAG----CAAGAUAUUUCUAACUAAAUAAUUCAA ......(((((.((.((((((.....))))))..((((((....((((....))))...)))))).................)----).(((....))).........))))). ( -17.50, z-score = -0.08, R) >droEre2.scaffold_4845 12388890 114 - 22589142 CAUAAAUGAAUAGCAAAACGGGUUCUUUGUUUGUCGAUUGUUUGGGCUCUCAAGGCAUUCAAUUGCCCGUUUUAUUAUGUAAAUAUGUAAGAUGUUUUCUUCUAAAUAAUUCAA ((((.....((((.(((((((((...(((..((((((..((....))..))..))))..)))..))))))))).)))).....)))).((((.....))))............. ( -23.70, z-score = -1.71, R) >consensus CAUAAAUGAAUAGCAAAACGGGUUCUUUGUUUGUCGAUUGUUUGGGUUCUCAAGGCAUUCAAUUGCCCGUUUUACUAUGCAAA____UAAGAUAUUUUCUUCUCAAUAAUUCAA ......((.((((.(((((((((...(((..((((....(........)....))))..)))..))))))))).)))).))................................. (-20.44 = -20.32 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:42:57 2011