| Sequence ID | dm3.chr2R |
|---|---|
| Location | 18,243,741 – 18,243,846 |
| Length | 105 |
| Max. P | 0.624274 |
| Location | 18,243,741 – 18,243,846 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 71.29 |
| Shannon entropy | 0.50300 |
| G+C content | 0.53607 |
| Mean single sequence MFE | -36.06 |
| Consensus MFE | -20.16 |
| Energy contribution | -21.12 |
| Covariance contribution | 0.96 |
| Combinations/Pair | 1.34 |
| Mean z-score | -1.13 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.624274 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 18243741 105 - 21146708 CUCCGUGUGUGCGUUUGU-UCUGCCGCCAUUGUUCGGGAUAUCA-GAUACAC--AUAUCCUGGCACCGAUGGCGGCGUCUGCCAGGAGAGCCAC-----AAAAAAGGCAGCAGG- ((((((....))......-...((((((((((.(((((((((..-.......--)))))))))...))))))))))........)))).(((..-----......)))......- ( -38.20, z-score = -1.40, R) >droSec1.super_9 1552167 105 - 3197100 CUCCAUGUGUGCGUUUGU-UCUGCCGCCAUUGUUCGGGAUAUCA-GAUACAC--AUAUCCUGGCACCGAUGGCGGCGUCUGCCAGGAGAGCCAC-----AAAAAAGGCAUCAGG- (((((((....)))....-...((((((((((.(((((((((..-.......--)))))))))...))))))))))........)))).(((..-----......)))......- ( -37.90, z-score = -1.75, R) >droYak2.chr2R 17991775 112 - 21139217 CUCCAUGUGUGCGCCUGU-UCCGCUGCCAUUGUCCGGGAUAUCA-GAUACACAUAUAUCCUGCCACCGAUGGCGGCGUCUGCCAGGAGAGGCACUAAAAAAAAAAGGCAGCAGG- .........(((((((..-..(((((((((((..((((((((..-.........))))))))....)))))))))))..((((......))))...........)))).)))..- ( -40.20, z-score = -1.91, R) >droEre2.scaffold_4845 12384303 108 - 22589142 CUCCAUGUGCGCGUUUGU-UCUGCUGCCAUUGUUCGGGAUAUCA-GAUACAC--AUAUCCUGCCACCGAUGGCGGCGUCUGCCAGGAGGGCCGGGCCACAAAAAAGGC--CAGG- ((((.((.((((....))-...((((((((((..((((((((..-.......--))))))))....))))))))))....))))))))..((.((((........)))--).))- ( -41.00, z-score = -1.06, R) >droMoj3.scaffold_6496 12930209 105 - 26866924 CUGUGUGUGUGUGUUCAUGUCUCUCUUUUUUUUUUGCCACAUCAGGAUGUUGGCAGACCAUGCCGAUAAAGUUCAC-UUAGCC---GCAGCUG------AAAAACCACAUCGACA (.(((((.(((((..(....................((......)).((((((((.....))))))))..)..)))-(((((.---...))))------)...))))))).)... ( -23.00, z-score = 0.49, R) >consensus CUCCAUGUGUGCGUUUGU_UCUGCCGCCAUUGUUCGGGAUAUCA_GAUACAC__AUAUCCUGCCACCGAUGGCGGCGUCUGCCAGGAGAGCCAC_____AAAAAAGGCAGCAGG_ ((((.((.((((....))...(((((((((((..((((((((............))))))))....)))))))))))...))))))))........................... (-20.16 = -21.12 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:42:56 2011