| Sequence ID | dm3.chr2R |
|---|---|
| Location | 18,235,495 – 18,235,590 |
| Length | 95 |
| Max. P | 0.864220 |
| Location | 18,235,495 – 18,235,590 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 74.04 |
| Shannon entropy | 0.46865 |
| G+C content | 0.51954 |
| Mean single sequence MFE | -33.66 |
| Consensus MFE | -9.13 |
| Energy contribution | -10.85 |
| Covariance contribution | 1.72 |
| Combinations/Pair | 1.06 |
| Mean z-score | -3.10 |
| Structure conservation index | 0.27 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.97 |
| SVM RNA-class probability | 0.864220 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 18235495 95 - 21146708 AAGCAUGUUAGCA------GUAUAUUCCAUAGACCCCUUUGGG--UUUUCCCCAGCCAGGAG---GACCUCAUCUAUCUGCGGCCUGUGCUGUCAGUGUGCAACAU ..(((..((..((------(((((..((.((((.......(((--((((((.......))))---)))))......)))).))..)))))))..))..)))..... ( -33.42, z-score = -2.77, R) >dp4.chr3 4882604 86 + 19779522 ----GAGUGUACA-----UAUGAACACCAUAAAUACUCCGA-----UUAGGCAAGCCACGGGACUGACCCAACCCAACCCUACCCUAAGCGGAC-CUCCAC----- ----(((.(((..-----((((.....))))..)))((((.-----(((((..((....(((..........)))....))..))))).)))).-)))...----- ( -17.40, z-score = -1.69, R) >droEre2.scaffold_4845 12378072 94 - 22589142 AAGCAUGUUAGCA------GUAUAUUCCGUAGACCCGCUGGGG---UUUCCCCAGCCAGGAG---GACCUCAUCUAUCUGCGGCCUGUGCUGUCAGUGUGCAACAU ..(((..((..((------(((((..(((((((((.(((((((---...)))))))..)).(---((.....))).)))))))..)))))))..))..)))..... ( -43.00, z-score = -4.65, R) >droYak2.chr2R 17986984 103 - 21139217 AAGCAUGUUAGCAGUACAUGUAUAUGCCGUAGACCCCUUUGGGGUUUUCCCCCAGCCAGAAG---GACCUCAUCUAUCUGCGGCCUGUGCUGUCAGUGUGCAACAU ..(((..((..(((((((.(.....((((((((.....((((((.....))))))((....)---)..........))))))))))))))))..))..)))..... ( -38.90, z-score = -3.36, R) >droSec1.super_9 1545737 95 - 3197100 AUGCAUGUUAGCA------GUAUAUUCCAUAGACCCCUUUGGG--UUCUCCCCAGCCAGGAG---GACCUCAUCUAUCUGCGGCCUGUGCUGUCAGUGUGCAACAU .((((..((..((------(((((..((.((((.......(((--((((((.......))))---)))))......)))).))..)))))))..))..)))).... ( -36.72, z-score = -3.44, R) >droSim1.chr2R 16835462 95 - 19596830 AUGCAUGUUAGCA------GUAUAUUCCAUAGACCCCUUUGGG--UUCUCCCCAGCCAGGAG---GACCUCAUCUAUCUGCCGCCUGUGCUGUCAGUGUGCAACAU .((((..((..((------(((((..(..((((.......(((--((((((.......))))---)))))......))))..)..)))))))..))..)))).... ( -32.52, z-score = -2.70, R) >consensus AAGCAUGUUAGCA______GUAUAUUCCAUAGACCCCUUUGGG__UUUUCCCCAGCCAGGAG___GACCUCAUCUAUCUGCGGCCUGUGCUGUCAGUGUGCAACAU ..(((..((........................(((....))).........((((((((.......................)))).))))..))..)))..... ( -9.13 = -10.85 + 1.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:42:55 2011