| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,640,187 – 3,640,285 |
| Length | 98 |
| Max. P | 0.520095 |
| Location | 3,640,187 – 3,640,285 |
|---|---|
| Length | 98 |
| Sequences | 7 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 74.93 |
| Shannon entropy | 0.43497 |
| G+C content | 0.50440 |
| Mean single sequence MFE | -26.31 |
| Consensus MFE | -14.40 |
| Energy contribution | -15.16 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.520095 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3640187 98 + 23011544 CGCUCCUGGUAU------CUGUAUCUGUAUCUCUGUCCCGCUCCCAGUCCCGAUCGAUUAUCGCCGGCUGCAGCUUCUGGUAGUCGGCAUAGAACAGAUUACUA--------- ......((((((------((((.(((((...((.(((..((.....))...))).)).....(((((((((........))))))))))))))))))).)))))--------- ( -29.60, z-score = -1.71, R) >droPer1.super_1 3699501 104 - 10282868 CGUUUUCUGCCU------CUAUAUCCGGUGGUUUAUCCCUGU---AAUCCCUAUGAAUUAUCGCUGGCUUUAAUCUCUGAUAUUCCGCAUAGAAUAGAUCUCCUCCCUUUCCG ...........(------((((.((..((((..((((....(---((..((..(((....)))..))..)))......))))..))))...)))))))............... ( -16.60, z-score = -0.98, R) >dp4.chr4_group3 6600065 104 - 11692001 CGUUUUCUGGCU------CUAUAUCCGGUGGUUUAUCCCUGU---AAUCCCUAUGAACUAUCGCUGGCUUUAAUUUCUGAUAUUCCGCAUAGAAUAGAUCUCCUCCCUUUCCG ........((.(------((((.((..((((..((((....(---((..((..(((....)))..))..)))......))))..))))...)))))))...)).......... ( -17.50, z-score = -0.57, R) >droEre2.scaffold_4929 3678978 92 + 26641161 CGCUCCUGGUAU------CUGUAUCU------CGGUCCCGCUCCCAGUCCCGAUCGAUUAUCGCCGGCUGCAGCUUCUGGUAGUCGGCAUAGAACAGAUUACUA--------- ......((((((------((((.(((------(((((..((.....))...)))))).....(((((((((........)))))))))...))))))).)))))--------- ( -31.00, z-score = -1.98, R) >droYak2.chr2L 3634145 104 + 22324452 CGCUCCUGGUAUUCGUAUCUGUAUCUGUAUCUCUGUCCCGCUCCCAGUGCCGAUCGAUUAUCGCCGGCUGCAGCUUCUGGUAGUCGGCAUAGAACAGAUUACUA--------- ..............((((((((.(((((...((.(((.(((.....)))..))).)).....(((((((((........))))))))))))))))))).)))..--------- ( -30.30, z-score = -1.17, R) >droSec1.super_5 1741101 98 + 5866729 CGCUCCUGGUAU------CUGUAUCUGUAUCUCUGUCCCGCUCCCAGUCCCGAUCGAUUAUCGCCGGCUGCAGCUUCUGGUAGUCGGCAUAGAACAGAUUACUA--------- ......((((((------((((.(((((...((.(((..((.....))...))).)).....(((((((((........))))))))))))))))))).)))))--------- ( -29.60, z-score = -1.71, R) >droSim1.chr2L 3599604 98 + 22036055 CGCUCCUGGUAU------CUGUAUCUGUAUCUCUGUCCCGCUCCCAGUCCCGAUCGAUUAUCGCCGGCUGCAGCUUCUGGUAGUCGGCAUAGAACAGAUUACUA--------- ......((((((------((((.(((((...((.(((..((.....))...))).)).....(((((((((........))))))))))))))))))).)))))--------- ( -29.60, z-score = -1.71, R) >consensus CGCUCCUGGUAU______CUGUAUCUGUAUCUCUGUCCCGCUCCCAGUCCCGAUCGAUUAUCGCCGGCUGCAGCUUCUGGUAGUCGGCAUAGAACAGAUUACUA_________ ..................((((.((((........................(((.....)))(((((((((........))))))))).))))))))................ (-14.40 = -15.16 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:14:19 2011