| Sequence ID | dm3.chr2R |
|---|---|
| Location | 18,235,134 – 18,235,237 |
| Length | 103 |
| Max. P | 0.969691 |
| Location | 18,235,134 – 18,235,237 |
|---|---|
| Length | 103 |
| Sequences | 4 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 75.53 |
| Shannon entropy | 0.39375 |
| G+C content | 0.49673 |
| Mean single sequence MFE | -32.05 |
| Consensus MFE | -20.40 |
| Energy contribution | -24.64 |
| Covariance contribution | 4.25 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.82 |
| SVM RNA-class probability | 0.969691 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 18235134 103 + 21146708 GGGUCGAGCGAUAAAACCCCUCAGCUCACAUGUGAAUGUUUACGAAUAUACAUA--------CAUGUAUAUUUGUGUGCCGGGCUUAGGCCAACAGAAGCGACCGAGCCCA ((((((.((.........(((.(((((((((....)))).((((((((((((..--------..))))))))))))....))))).))).........))...))).))). ( -33.47, z-score = -2.76, R) >droEre2.scaffold_4845 12377736 80 + 22589142 GGGUCGAGCGAUGGAGCCUUCUG---CACAUGUGAAUGUUUACGAAUACAUAC----------------------------GGCUUAGAGCAACAGAAGCGGCCAACCCCG .(((((.((......))((((((---...(((((..((....))..)))))..----------------------------.((.....))..)))))))))))....... ( -18.90, z-score = 0.25, R) >droSec1.super_9 1545367 111 + 3197100 GGGUCGAGCGAUAGAACCCCUCAGCUCACAUGUGAAUGUUUACGAAUAUACAUAUGUAUCUACAUGCAUGUUUGUAUGCCGGGCUUAGGCCAACAGAAGCGACCGACCCCA ((((((.((.........(((.((((((((((((.(((((....))))).))))))).....((((((....))))))..))))).))).........))...)))))).. ( -38.17, z-score = -3.44, R) >droSim1.chr2R 16835094 111 + 19596830 GGGUCGAGCGAUAGAACCCCUCAGCUCACAUGUGAAUGUUUACGAAUAUACAUAUGUAUCUGCAUGUAUGUUUGUAUGUCGGGCUUAGGCCAACAGAAGCGACCGACCCCA ((((((.((.........(((.(((((((((....)))).((((((((((((..(((....)))))))))))))))....))))).))).........))...)))))).. ( -37.67, z-score = -2.94, R) >consensus GGGUCGAGCGAUAGAACCCCUCAGCUCACAUGUGAAUGUUUACGAAUAUACAUA________CAUGUAUGUUUGUAUGCCGGGCUUAGGCCAACAGAAGCGACCGACCCCA ((((((.((.........(((.(((((((((....)))).(((((((((((((..........)))))))))))))....))))).))).........))...)))))).. (-20.40 = -24.64 + 4.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:42:54 2011