| Sequence ID | dm3.chr2R |
|---|---|
| Location | 18,155,951 – 18,156,073 |
| Length | 122 |
| Max. P | 0.723099 |
| Location | 18,155,951 – 18,156,046 |
|---|---|
| Length | 95 |
| Sequences | 8 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 73.31 |
| Shannon entropy | 0.46328 |
| G+C content | 0.56978 |
| Mean single sequence MFE | -34.27 |
| Consensus MFE | -12.44 |
| Energy contribution | -12.68 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.37 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.723099 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 18155951 95 + 21146708 ---------------AGCGAGUCGAGGUCGAGCCUUUGGGGAUGCUAAUCCCAAUACGACUGGCAAUCC-------UGCCAAACUGCCGGCAGACAACUCACAACCUCGCUUGCCGC ---------------.(((((.((((((.(.(((.((((((((....)))))....)))..)))....(-------((((........)))))........).)))))))))))... ( -36.80, z-score = -3.09, R) >droPer1.super_4 4070072 90 + 7162766 -----------------------GCGAGCCAGUCUUUGGGGAUGCUAAUCCCAAUACCAAUCCCCAGCCCAUCACUUGCCACACUGCCGCCAGACAGUGAACGGCUGUGUGUG---- -----------------------(((((.......((((((((................)))))))).......)))))(((((.((((............)))).)))))..---- ( -28.53, z-score = -1.50, R) >dp4.chr3 4797817 90 - 19779522 -----------------------GCGAGCCAGUCUUUGGGGAUGCUAAUCCCAAUACCAAUCCCCAGCCCAUCACUUGCCGCACUGCCGCCAGACAGUGAACGGCUGUGUGUG---- -----------------------(((((.......((((((((................)))))))).......)))))(((((.((((............)))).)))))..---- ( -28.13, z-score = -1.12, R) >droAna3.scaffold_13266 2164899 100 + 19884421 AACGAGUCAGUUCGGUUCGAGUCGAG-UCGAGGCUUUGGGGAUGCUAAUCCCAAUACGACUGGCAAUCC-------UGCCAAACUGCCGGCAGACAACUCGCCUCACC--------- ...((.((..((((...))))..)).-))(((((....(((((....))))).....((.(((((....-------)))))..(((....))).....)))))))...--------- ( -33.30, z-score = -1.25, R) >droEre2.scaffold_4845 12297005 95 + 22589142 ---------------AGCGAGUCGAGGUCGAGUCUUUGGGGAUGCUAAUCCCAAUACGACUGGCAAUCC-------UGCCAAACUGCAGGCAGGCAACUCACAUCCUCGCUUGCCGC ---------------.(((((.(((((((.((((....(((((....))))).....)))))))...((-------((((........))))))...........)))))))))... ( -38.10, z-score = -2.89, R) >droYak2.chr2R 17905946 95 + 21139217 ---------------AGCGAGUCGAGGUCGAGUCUUUGGGGAUGCUAAUCCCAAUACGACUGGCAAUUC-------UACCAAACUGCAGGCAGACAACUCACGACCUCGCUUGCCGC ---------------.(((((.((((((((((((....(((((....))))).....))))......((-------(.((........)).))).......)))))))))))))... ( -37.20, z-score = -3.65, R) >droSec1.super_9 1466158 95 + 3197100 ---------------AGCGAGUGGAGGUCGAGUCUUUGGGGAUGCUAAUCCCAAUACGACUGGCAAUCC-------UGCCAAACUGCCGGCAGACAACUCACAACCUCGCUUGCCGC ---------------.(((((((.(((((.((((....(((((....))))).....)))).).....(-------((((........)))))..........)))))))))))... ( -35.10, z-score = -2.26, R) >droSim1.chr2R 16755610 95 + 19596830 ---------------AGCGAGUCGAGGUCGAGUCUUUGGGGAUGCUAAUCCCAAUACGACUGGCAAUCC-------UGCCAAACUGCCGGCAGACAACUCACAACCUCGCUUGCCGC ---------------.(((((.(((((((.((((....(((((....))))).....)))).).....(-------((((........)))))..........)))))))))))... ( -37.00, z-score = -3.17, R) >consensus _______________AGCGAGUCGAGGUCGAGUCUUUGGGGAUGCUAAUCCCAAUACGACUGGCAAUCC_______UGCCAAACUGCCGGCAGACAACUCACAACCUCGCUUGCCGC .......................(((.....(((....(((((....)))))........................((((........)))))))..)))................. (-12.44 = -12.68 + 0.24)
| Location | 18,155,974 – 18,156,073 |
|---|---|
| Length | 99 |
| Sequences | 8 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 74.47 |
| Shannon entropy | 0.48758 |
| G+C content | 0.56264 |
| Mean single sequence MFE | -28.20 |
| Consensus MFE | -14.12 |
| Energy contribution | -14.19 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.653807 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 18155974 99 + 21146708 GGGAUGCUAAUCCCAAUACGACUGGCAAUCC-------UGCCAAACUGCCGGCAGACAACUCACAACCUCGCUUGCCGCACUUUCCAACUCCAGGCGAUGUACUGC (((((....)))))..........(((...(-------((((........)))))..........((.(((((((................))))))).))..))) ( -25.39, z-score = -1.49, R) >droPer1.super_4 4070087 100 + 7162766 GGGAUGCUAAUCCCAAUACCAAUCCCCAGCCCAUCACUUGCCACACUGCCGCCAGACAGUGAACGGCUGUGUGUGG-ACGGUCCGGGAAU---GGCUGUACAGC-- (((((....))))).((((((.((((..(((((.....))((((((.((((............))))...))))))-..)))..)))).)---)).))).....-- ( -35.80, z-score = -0.99, R) >dp4.chr3 4797832 100 - 19779522 GGGAUGCUAAUCCCAAUACCAAUCCCCAGCCCAUCACUUGCCGCACUGCCGCCAGACAGUGAACGGCUGUGUGUGG-ACGGUCCGGGAAU---GGCUGUACAGC-- (((((....))))).((((((.((((..(((((((((..(((((((((.(....).)))))..)))).))).))).-..)))..)))).)---)).))).....-- ( -37.70, z-score = -1.35, R) >droAna3.scaffold_13266 2164936 90 + 19884421 GGGAUGCUAAUCCCAAUACGACUGGCAAUCC-------UGCCAAACUGCCGGCAGACAACUCGC---CUCAC------CAUUUCCAAACUUCAGGCGAUGCACUGA (((((....)))))..........(((...(-------((((........))))).....((((---((...------..............)))))))))..... ( -25.83, z-score = -2.63, R) >droEre2.scaffold_4845 12297028 99 + 22589142 GGGAUGCUAAUCCCAAUACGACUGGCAAUCC-------UGCCAAACUGCAGGCAGGCAACUCACAUCCUCGCUUGCCGCACUUCUCAACUCCAGGCGCUGCACUGC (((((....)))))........(((((....-------)))))...(((((((((((.............)))))))((.(((.........))).)))))).... ( -30.52, z-score = -1.89, R) >droYak2.chr2R 17905969 99 + 21139217 GGGAUGCUAAUCCCAAUACGACUGGCAAUUC-------UACCAAACUGCAGGCAGACAACUCACGACCUCGCUUGCCGCACUUUCAAACUCUAGGCGAUACACUGC (((((....)))))........(((......-------..)))....((((((((............)).))))))(((.((..........)))))......... ( -19.60, z-score = -0.63, R) >droSec1.super_9 1466181 99 + 3197100 GGGAUGCUAAUCCCAAUACGACUGGCAAUCC-------UGCCAAACUGCCGGCAGACAACUCACAACCUCGCUUGCCGCACUUCCCAACUCCAGGCGAUGUACUGC (((((....)))))..........(((...(-------((((........)))))..........((.(((((((................))))))).))..))) ( -25.39, z-score = -1.47, R) >droSim1.chr2R 16755633 99 + 19596830 GGGAUGCUAAUCCCAAUACGACUGGCAAUCC-------UGCCAAACUGCCGGCAGACAACUCACAACCUCGCUUGCCGCACUUCCCAACUCCAGGCGAUGUACUGC (((((....)))))..........(((...(-------((((........)))))..........((.(((((((................))))))).))..))) ( -25.39, z-score = -1.47, R) >consensus GGGAUGCUAAUCCCAAUACGACUGGCAAUCC_______UGCCAAACUGCCGGCAGACAACUCACAACCUCGCUUGCCGCACUUCCCAACUCCAGGCGAUGCACUGC (((((....))))).........................(((...(((....)))...............((.....))..............))).......... (-14.12 = -14.19 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:42:48 2011