| Sequence ID | dm3.chr2R |
|---|---|
| Location | 18,132,910 – 18,133,012 |
| Length | 102 |
| Max. P | 0.809847 |
| Location | 18,132,910 – 18,133,012 |
|---|---|
| Length | 102 |
| Sequences | 12 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 75.15 |
| Shannon entropy | 0.52153 |
| G+C content | 0.41389 |
| Mean single sequence MFE | -22.73 |
| Consensus MFE | -11.49 |
| Energy contribution | -11.50 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.809847 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 18132910 102 + 21146708 -------------CCCUGUC-ACUGAUAUCGCAAUUAAUCCAAAUAAGUGCGAUAAAAUUGAUUAUGAACAUGCUGGCGUGAUUAGUCCAGCCCAACUCCCUCUCUGGAAAAAGUG--- -------------......(-(((..(((((((.(((.......))).))))))).................((((((.......).))))).....(((......)))...))))--- ( -19.30, z-score = -1.18, R) >droSim1.chr2R 16732560 102 + 19596830 -------------CCCUGUC-ACUGAUAUCGCAAUUAAUCCAAAUAAGUGCGAUAAAAUUGAUUAUGAACAUGCUGGCGUGAUUAGUCCAGCCCAACUCCCUCUCUGGAAAAAGUG--- -------------......(-(((..(((((((.(((.......))).))))))).................((((((.......).))))).....(((......)))...))))--- ( -19.30, z-score = -1.18, R) >droSec1.super_9 1443276 102 + 3197100 -------------CCCUGUC-ACUGAUAUUGCAAUUAAUCCAAAUAAGUGCGAUAAAAUUGAUUAUGAACAUGCUGGCGUGAUUAGUCCAGCCCAACUCCCUCUCUGGAAAAAGUG--- -------------......(-(((..(((((((.(((.......))).))))))).................((((((.......).))))).....(((......)))...))))--- ( -17.20, z-score = -0.41, R) >droYak2.chr2R 17881771 102 + 21139217 -------------CCCUGUC-ACUGAUAUCGCAAUUAAUCCAAAUAAGUGCGAUAAAAUUGAUUAUGAACAUGCUGGCGUGAUUAGUCCAGUCCAACUCCCUCUCUGGAAAAAGUG--- -------------......(-(((..(((((((.(((.......))).)))))))...(((((((((..........)))))))))(((((.............)))))...))))--- ( -19.62, z-score = -1.31, R) >droEre2.scaffold_4845 12273419 101 + 22589142 -------------CCCUGUC-ACUGAUAUCGCAAUUAAUCCAAAUAAGUGCGAUAAAAUUGAUUAUGAACAUGCUGGCGUGAUUAGUCCCGCCCAACACCCACUCCGGCAGAAGU---- -------------..(((((-.....(((((((.(((.......))).)))))))....................((((.((....)).)))).............)))))....---- ( -22.00, z-score = -1.51, R) >droAna3.scaffold_13266 2141053 101 + 19884421 -------------CCCUGUCUAGUGAUAUCGCAAUUAAUCCAAAUAAGUGCGAUAAAAUUGAUUAUGAACAUGCUGGCGUGAUUA-----GCCCACUCCCCGCACAGUAAAAAGUAAAG -------------..((((.((((..(((((((.(((.......))).)))))))..))))...........((.((.(((....-----...))).))..))))))............ ( -18.00, z-score = -1.28, R) >dp4.chr3 4771813 110 - 19779522 CCCGUCACCCAGUCGCUGUC-AGUGAUAUCGCAAUUAAUCCAAAUAAGUGCGAUAAAAUUGAUUAUGAACAUGCUGGCGUGAUUA-----GUCGAACCCUCAGUGCAGGGGUUGUG--- ...((((((((((((..(((-(((..(((((((.(((.......))).)))))))..))))))..)).....))))).)))))..-----....((((((.......))))))...--- ( -33.20, z-score = -2.48, R) >droPer1.super_4 4043392 110 + 7162766 CCCGUCACCCAGUCGCUGUC-AGUGAUAUCGCAAUUAAUCCAAAUAAGUGCGAUAAAAUUGAUUAUGAACAUGCUGGCGUGAUUA-----GUCCAACCCUCAGUGCAGGGGUUGUG--- ...((((((((((((..(((-(((..(((((((.(((.......))).)))))))..))))))..)).....))))).)))))..-----...(((((((.......)))))))..--- ( -35.60, z-score = -3.45, R) >droWil1.scaffold_180697 3868133 115 - 4168966 -UUCGUUCCGUCACCCUGUCGAGUGAUAUCGCAAUUAAUCCAAAUAAGUGCGAUAAAAUUGAUUAUGAACAUGCUGGCGUGAUUAGUCCACAUUUCUAUUCUAGGGUGUGAGCGAG--- -.((((((...(((((((..(((((.(((((((.(((.......))).)))))))..((((((((((..........)))))))))).........)))))))))))).)))))).--- ( -34.10, z-score = -2.93, R) >droGri2.scaffold_15245 8327396 86 + 18325388 -------------CCCUAUU-AUUGAUAUCGCAACUAAUCCAAAUAAGUGCGAUAAAAUUGAUUAUGAACAUGCUGGCGUGAUUAGUGCAGGGCACAAUU------------------- -------------((((...-.....(((((((.((..........)))))))))..((((((((((..........))))))))))..)))).......------------------- ( -18.60, z-score = -0.90, R) >droMoj3.scaffold_6496 2441331 85 + 26866924 ---------------CUGUC-AUUGAUAUCGCAAUUAAUCCAACUAAGUGCGAUAAAAUUGAUUAUGAACAUGCUGGCGUGAUUAGUGCUAGGCACAAAUU------------------ ---------------..(((-(.(..(((((((.(((.......))).)))))))..).))))..(((.((((....)))).)))((((...)))).....------------------ ( -18.00, z-score = -0.62, R) >droVir3.scaffold_10324 605857 84 + 1288806 ---------------CUGUC-AUUGAUAUCGCAAUUAAUCCAAAUAAGUGCGAUAAAAUUGAUUAUGAACAUGCUGGCGUGAUUA-----GUGCAACGCACAUUU-------------- ---------------..(((-(.(..(((((((.(((.......))).)))))))..).))))..(((.((((....)))).)))-----((((...))))....-------------- ( -17.80, z-score = -0.45, R) >consensus _____________CCCUGUC_ACUGAUAUCGCAAUUAAUCCAAAUAAGUGCGAUAAAAUUGAUUAUGAACAUGCUGGCGUGAUUAGUCCAGCCCAACACCCUCUCUGGAAAAAGUG___ ..........................(((((((.(((.......))).)))))))....((((((((..........)))))))).................................. (-11.49 = -11.50 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:42:44 2011