| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,639,549 – 3,639,656 |
| Length | 107 |
| Max. P | 0.751072 |
| Location | 3,639,549 – 3,639,656 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 64.61 |
| Shannon entropy | 0.63706 |
| G+C content | 0.58307 |
| Mean single sequence MFE | -45.20 |
| Consensus MFE | -19.97 |
| Energy contribution | -21.32 |
| Covariance contribution | 1.34 |
| Combinations/Pair | 1.55 |
| Mean z-score | -1.18 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.751072 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3639549 107 + 23011544 ----------GUACAGGCCC-UGCGUCUGCGCCUGAAGCUGCUGCAAUUGCUGAUAGCGCUGCUGUAGCUGCAGCUCCUGUUGGU-GCAGAAGGCUUCGGGGAUCCUGGUUCAAUUGCU- ----------...(((((((-(((.((((((((...((..((((((...(((.(((((...))))))))))))))..))...)))-)))))..))...))))..))))...........- ( -46.00, z-score = -1.37, R) >droYak2.chr2L 3633504 107 + 22324452 ----------GUACAGACCU-UGGGUCUGUGCCUGCAGUUGUUGCAAUUGCUGAUAGCGCUGCUGCAGCUGCAGCUCCUGUUGGU-GCAGUAGGCUGCGGGGAUCCUGGUUCAGUUGCU- ----------(((((((((.-..)))))))))..(((..((..((.(((.(((.((((.((((((((.(.((((...)))).).)-)))))))))))))).)))....)).))..))).- ( -47.20, z-score = -1.29, R) >droAna3.scaffold_12916 5694745 107 + 16180835 ----------GUACAGGCCC-UGGGUCUGGGCCUGGAGCUGUUGCAGUUGCUGGUAGCGCUGCUGCAGUUGCAGCUCCUGUUGGU-GCAACAAACUACGUGGAUCCUGGUGGAGUUGCU- ----------...(((((((-.......))))))).((((((.(((((.((.....))))))).))))))(((((((((((((..-.))))).((((.(.....).)))))))))))).- ( -48.70, z-score = -1.61, R) >droWil1.scaffold_180708 3053506 108 - 12563649 ----------AUAGAAACCU-UGUGUCUGCGCCUGCAAUUGCUGCAAUUGUUGAUAGCGUUGCUGCAACUGCAGUUCCUGUUGAU-GCAGCAGACUCCUGGGAUCUGUGUGUAACUGCUG ----------(((((..((.-.(.((((((..(((((.((((.(((((.((.....))))))).)))).)))))....(((....-))))))))).)..))..)))))............ ( -37.60, z-score = -2.54, R) >droGri2.scaffold_15126 4290670 102 + 8399593 ----------AUAGAUGCCC-UGUGUCUGUGCCUGCAACUGUUGCAAUUGCUGAUAGCGCUGCUGCAGCACCAGCUCCUGCUGAU-GCAGCAGACUGCGUUGAUCUGUGUGCUG------ ----------((((((((..-.))))))))((.((((.....))))...((.((((((((..((((.(((.((((....)))).)-)).))))...))))).))).))..))..------ ( -35.30, z-score = -0.60, R) >anoGam1.chr3R 20329417 118 + 53272125 GAAACCGUGCGCGCUGACUGAUGCGUCGGUCGCUGCAGCUGUCGCGGACGCGGCAGUCUUCUUCGCGGCCGGAACCGAGGAGGGCAGCAGCACGUCGC-CGAACCGGGGCGCGGCCGAG- ....(((((((.(((((((((....))))))(((((.((((((((....))))))))((((((((.(.......))))))))))))))))).)....(-((...))).)))))).....- ( -56.40, z-score = 0.30, R) >consensus __________GUACAGACCC_UGCGUCUGUGCCUGCAGCUGUUGCAAUUGCUGAUAGCGCUGCUGCAGCUGCAGCUCCUGUUGGU_GCAGCAGACUGCGGGGAUCCGGGUGCAGUUGCU_ .............(((((......))))).....(((((((((((....((((((((....(((((....)))))..)))))))).)))))).)))))...................... (-19.97 = -21.32 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:14:18 2011