| Sequence ID | dm3.chr2R |
|---|---|
| Location | 18,130,728 – 18,130,836 |
| Length | 108 |
| Max. P | 0.758640 |
| Location | 18,130,728 – 18,130,836 |
|---|---|
| Length | 108 |
| Sequences | 12 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 65.19 |
| Shannon entropy | 0.74681 |
| G+C content | 0.42586 |
| Mean single sequence MFE | -30.75 |
| Consensus MFE | -5.76 |
| Energy contribution | -5.45 |
| Covariance contribution | -0.31 |
| Combinations/Pair | 1.92 |
| Mean z-score | -2.32 |
| Structure conservation index | 0.19 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.758640 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 18130728 108 - 21146708 CAAAGCGUAGUAGAAAUACUGCGAAA-UUUCGUUCUGGUUAGCGAGGCA-AACAAACAGCUCUGCGUGUGUGCGUCAGUGAGUGACCAAAACAAAGCACACGCACAGGGA--------- ....((((((((....))))))....-.((((((......)))))))).-.........(((((.((((((((((((.....)))).........)))))))).))))).--------- ( -36.50, z-score = -2.36, R) >droSim1.chr2R 16730401 109 - 19596830 CGAAGCGUAGUAGAAAUACUGCGAAAUUUUCGUUCUGGUAAUCGAGGCA-AACAAACAGUUCUGCGUGUGUGCGUCAGUGAGUGACCAAAACAAAGCACACGCACAGGGA--------- ((((((((((((....)))))))....)))))(((((.........(((-(((.....))).)))((((((((((((.....)))).........)))))))).))))).--------- ( -33.40, z-score = -1.75, R) >droSec1.super_9 1441016 108 - 3197100 CGAAGCGUAGUAGAUAUACUGCGAAAUUUUCAUUCUGGUAAGCGAGGGA-AACACACAGCU-UACGUGUGUGCGUCAGUGAGUGACCAAAACAAAGCACACGCACAGGGA--------- .(((((((((((....)))))))....)))).(((((((((((...(..-..).....)))-)))((((((((((((.....)))).........)))))))).))))).--------- ( -37.50, z-score = -3.66, R) >droYak2.chr2R 17879305 108 - 21139217 UAAAGCGCAGUAGAAAUACUGCGAAA-UUCCAUUCCAGUGAGUGAGGCA-AACAAUCAGCGUUGCGUGUGUGCGUUAGUGAGUGACCAAAACAAAGCACACGCACAGGAA--------- .....(((((((....)))))))...-.....((((.....(..(.((.-........)).)..)((((((((.....((......)).......))))))))...))))--------- ( -35.20, z-score = -3.01, R) >droEre2.scaffold_4845 12270990 108 - 22589142 UAAAGCGUAGUAGAAAUACUGCGAAA-UUCCAUUCCGGUGAGCGAGGCA-AACAAACAGCUUUGCGUGUGUGCGUUAGUGAGUGACCAAAACAAAGCACACGCACAGGGG--------- .....(((((((....)))))))...-......(((.((..(((((((.-........)))))))((((((((.....((......)).......)))))))))).))).--------- ( -36.40, z-score = -2.90, R) >droAna3.scaffold_13266 2138859 104 - 19884421 CAAAUAGUAGUAGAAAUACUACGAAA-UUCCUUGUUGGUGAGUGAGCUA-AGCAUACCGCUCUCCCGUUAUGCGU--GUGUGUGACCAAAACAAAGCACACAUACUUG----------- ......((((((....))))))....-.......(((((......))))-)(((((.((......)).)))))((--(((((((............)))))))))...----------- ( -28.70, z-score = -2.76, R) >dp4.chr3 4769044 113 + 19779522 CAAAAGGUAGUAGAAAUACUACUAAA-UUGUGUCUU--UCAUUCGCUCA-AACAAGCUGUCUUGCCUGUGUGCGUUUGUGUGUGACCAAAACAAAACACACACACAUAGGAAAACCC-- .....(((((((....)))))))...-.........--......(((..-....))).......((((((((....(((((((............))))))))))))))).......-- ( -30.00, z-score = -2.48, R) >droPer1.super_4 4040631 112 - 7162766 CAAAAGGUAGUAGAAAUACUACUAAA-UUGUGUCUU--UCAUUCGCUCA-AACAAGCUGUCUUGCCUGAGUGCGUUUGUGUGUGACCAAAACAAAACACACACACAUAGGAAUACC--- .....(((((((....)))))))...-....((.((--((...((((((-..((((....))))..)))))).((.(((((((............))))))).))...)))).)).--- ( -30.90, z-score = -2.80, R) >droWil1.scaffold_180697 3863485 104 + 4168966 AAAAACGUAGUAGAAAUAGUAGUAUAUAUUGGGCUCUCUGUG---------GCAAAG--AACGACUUGCGUGUAU--G--UGUUACCAAAACAAAGCACUCACACACUCUAACAAAUGG .....(((((.(((..(((((.....)))))...))))))))---------((((..--......))))((((..--(--((((..........)))))..)))).............. ( -17.00, z-score = 0.94, R) >droVir3.scaffold_10324 601393 93 - 1288806 -AAAAGGUAGUAGAAAUAGUAGUAU-U-----UUGCUCAGAGAGC------GUAGGU--CUUUGAUUGUGUGUGU--GCAUGUGACCAAAACAAAACACGCACACAACGA--------- -........((((((.........)-)-----))))(((((((.(------...).)--))))))((((((((((--(..(((.......)))...)))))))))))...--------- ( -24.90, z-score = -1.68, R) >droMoj3.scaffold_6496 2435987 96 - 26866924 ---AACGGAGUAGAAUUAGUAGUAU-UUUUGCUUUUUCAGAGAGC------GUCACU--CUUUGCUUGUGUGUAU--GCGUGUGACCAAAACAAAACACACACACAACGA--------- ---..((((((.(((..(((((...-..)))))..)))((((((.------....))--))))))))((((((.(--(..(((.......)))...)).))))))..)).--------- ( -24.90, z-score = -1.15, R) >droGri2.scaffold_15245 8323664 108 - 18325388 CAAAGAGUAGUAAAAAUACUACUAUUUAUUAUUUUCAUAGAGAGCAAGAGAGUAAAUGGCUUUGCUUGUGUGUGU--GCGUGUGACCAAAACAAAACACGCACACAUUGA--------- .....(((((((....)))))))....................((((((((((.....))))).)))))((((((--((((((............))))))))))))...--------- ( -33.60, z-score = -4.19, R) >consensus CAAAGCGUAGUAGAAAUACUACGAAA_UUUCGUUUUGGUGAGCGAGGCA_AACAAACAGCUUUGCGUGUGUGCGU__GUGUGUGACCAAAACAAAGCACACACACAGGGA_________ ....((((((...................................................))))))((((((......................)))))).................. ( -5.76 = -5.45 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:42:43 2011