| Sequence ID | dm3.chr2R |
|---|---|
| Location | 18,086,585 – 18,086,637 |
| Length | 52 |
| Max. P | 0.965579 |
| Location | 18,086,585 – 18,086,637 |
|---|---|
| Length | 52 |
| Sequences | 9 |
| Columns | 52 |
| Reading direction | forward |
| Mean pairwise identity | 90.92 |
| Shannon entropy | 0.19258 |
| G+C content | 0.41453 |
| Mean single sequence MFE | -14.02 |
| Consensus MFE | -12.88 |
| Energy contribution | -13.16 |
| Covariance contribution | 0.27 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.75 |
| SVM RNA-class probability | 0.965579 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 18086585 52 + 21146708 AGAAAGUCAUUGUCAAUGCCAAGUGCGAAUCAUUUGGCGUGCGAUAGAUACA .....((((((((..((((((((((.....))))))))))))))).)))... ( -16.60, z-score = -2.89, R) >droSim1.chr2R 16690200 52 + 19596830 AGAAUGCCAAUGUCAAUGCCAAGUGCGAAUCAUUUGGCGUGCGAUAGAUACA ..........((((.((((((((((.....))))))))))..))))...... ( -15.50, z-score = -1.99, R) >droSec1.super_9 1396890 52 + 3197100 AGAAUGCCAAUGUCAAUGCCAAGUGCGAAUCAUUUGGCGUGCGAUAGAUACA ..........((((.((((((((((.....))))))))))..))))...... ( -15.50, z-score = -1.99, R) >droYak2.chr2R 17833525 52 + 21139217 AGAAAGUCAUUGUCAAUGCCAAGUGCGAAUCAUUUGGCGUGCGAUAGAUACA .....((((((((..((((((((((.....))))))))))))))).)))... ( -16.60, z-score = -2.89, R) >droEre2.scaffold_4845 12225917 52 + 22589142 AGAAAGUCAUUGUCAAUGCCAAGUGCGAAUCAGUUGUCGUGCGAUAGAUACC .....((((((((..(((.(((.((.....)).))).)))))))).)))... ( -7.90, z-score = -0.05, R) >droAna3.scaffold_13266 2095072 52 + 19884421 AGAAAGUCAUUGUCAAUGCCAAGUGCGAAUCAUUUGGCGUGCGAUAGAUACA .....((((((((..((((((((((.....))))))))))))))).)))... ( -16.60, z-score = -2.89, R) >dp4.chr3 4724141 52 - 19779522 CGAAAGUCAUUGUCAAUGCCAAAUGCGAAUCAUUUGGCGUGCGAUAGAUACA .....((((((((..((((((((((.....))))))))))))))).)))... ( -16.60, z-score = -2.74, R) >droPer1.super_4 3995666 52 + 7162766 CGAAAGUCAUUGUCAAUGCCAAAUGCGAAUCAUUUGGCGUGCGAUAGAUACA .....((((((((..((((((((((.....))))))))))))))).)))... ( -16.60, z-score = -2.74, R) >droWil1.scaffold_180697 3797537 52 - 4168966 AAAAAGUCAUUGUCAAUGCCAAAUGAGAAUCAUUUUGUCUACGAAAUAAACA ......(((((..........))))).....((((((....))))))..... ( -4.30, z-score = 0.26, R) >consensus AGAAAGUCAUUGUCAAUGCCAAGUGCGAAUCAUUUGGCGUGCGAUAGAUACA ..........((((.((((((((((.....))))))))))..))))...... (-12.88 = -13.16 + 0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:42:40 2011