| Sequence ID | dm3.chr2R |
|---|---|
| Location | 18,066,905 – 18,066,998 |
| Length | 93 |
| Max. P | 0.517971 |
| Location | 18,066,905 – 18,066,998 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 71.09 |
| Shannon entropy | 0.57556 |
| G+C content | 0.52101 |
| Mean single sequence MFE | -37.42 |
| Consensus MFE | -15.77 |
| Energy contribution | -18.36 |
| Covariance contribution | 2.59 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.30 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.517971 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 18066905 93 + 21146708 UUCGGGAAUUGGGCUUGGUCGGUCUCAACUACCUGGAUGUGUUCAAGUCCCAGCGACUAAUUUCGGGGAAACGCAUCUGGAACUGCAUGUAUG----------------------- ..(((...(((((((.....)))).)))....(..((((((((....((((..(((......)))))))))))))))..)..)))........----------------------- ( -24.00, z-score = 0.31, R) >droEre2.scaffold_4845 12206292 116 + 22589142 UUCGUCAAGUGGGCUUGCUCGGUCUCAACUACCUGGAUGUGUUGAGGUCCCACAGACUAAUUUCGGGGAAACGCAUAUGGGACUCUAUGGAUGAGAGCGAGCGGAGCCCCUACCUC .......((.(((((((((((.(((((.(((((((.(((((((....((((...((......)).))))))))))).))))......))).))))).))))).))))))))..... ( -45.20, z-score = -2.24, R) >droYak2.chr2R 17812945 116 + 21139217 UUCGGCAAGUGGGCUUGCUCGGUCUCAACUACCUGGAUGUGUUGAAAUCCCACCGACUUAUUUCGGGGCAACACAUCUGGCACUCCAUGGAUGAGAAGGAGCGGAGACCCUACCUA ...((((((....)))))).((((((......(..(((((((((.....((.((((......)))))))))))))))..)(.((((...........)))).)))))))....... ( -44.00, z-score = -2.52, R) >droSec1.super_9 1377232 116 + 3197100 UUCGAGAAGUGGGCUUGGUCGGUCUCAACUACCUGGAUGUGUUGAAGUCCCAGCGACUAAUUUCGGGGAAACGCGUCUGGGACUCCAUGGAUGAGAAGCAACGGAGCCCCUACCUA .......((.((((((.((.(.(((((....((..((((((((....((((..(((......)))))))))))))))..))..((....)))))))..).)).))))))))..... ( -43.40, z-score = -1.63, R) >droSim1.chr2R_random 2757157 116 + 2996586 UUCGAGAAGUGGGCUUGGUCGGUCUCAACUACCUGGAUGUGUUGAAGUCCCAGCGACUAAUUUCGGGGAAACGCAUCUGGGACUCCAUGGAUGAGAAGCAACGGAGCCCCUACCUA .......((.((((((.((.(.(((((....((..((((((((....((((..(((......)))))))))))))))..))..((....)))))))..).)).))))))))..... ( -43.80, z-score = -1.98, R) >droWil1.scaffold_180699 1443626 116 + 2593675 GUAAUCGCAUGGGUUUGAAGGGACUUGGCUACUGUGAUUUGGUACGAGGCAAACAAUUAAGCGAGAUAUGGCUGAUAUGGGAACGCAUGGAUGAAGAGAAACGAGCGCCGUAUUUG ....((((.((.(((((......((((((((........)))).)))).)))))...)).))))((((((((......(....)((.((............)).)))))))))).. ( -24.10, z-score = 0.24, R) >consensus UUCGACAAGUGGGCUUGGUCGGUCUCAACUACCUGGAUGUGUUGAAGUCCCAGCGACUAAUUUCGGGGAAACGCAUCUGGGACUCCAUGGAUGAGAAGCAACGGAGCCCCUACCUA ..........((((((......(((((.(((((((((((((((....((((.............)))).))))))))))))......))).))))).......))).)))...... (-15.77 = -18.36 + 2.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:42:38 2011