| Sequence ID | dm3.chr2R |
|---|---|
| Location | 18,055,069 – 18,055,166 |
| Length | 97 |
| Max. P | 0.510438 |
| Location | 18,055,069 – 18,055,166 |
|---|---|
| Length | 97 |
| Sequences | 10 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 70.75 |
| Shannon entropy | 0.58803 |
| G+C content | 0.50770 |
| Mean single sequence MFE | -22.94 |
| Consensus MFE | -12.91 |
| Energy contribution | -12.44 |
| Covariance contribution | -0.47 |
| Combinations/Pair | 1.38 |
| Mean z-score | -0.59 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.510438 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 18055069 97 - 21146708 ------UGCCGCG--CGAGUGUUAAACAAUAAUAGGAAACGGCGCGCGGGCAUCAAUUAUAUGACAACCUCAGCCACACUCCAAGA---GGCUCUCCCCAUCU----CUGGG ------.(((.(.--.((((((............(....)(((..(.((...(((......)))...)).).)))))))))...).---)))....((((...----.)))) ( -27.70, z-score = -1.14, R) >droSec1.super_9 1365416 97 - 3197100 ------UGCCGCG--CGAGUGUUAAACAAUAAUAGGAAACGGCGCGCGGGCAUCAAUUAUAUGACAACCUCAGCCACACUCCAAGA---GGCUCUCCCCAUCU----CUGGG ------.(((.(.--.((((((............(....)(((..(.((...(((......)))...)).).)))))))))...).---)))....((((...----.)))) ( -27.70, z-score = -1.14, R) >droYak2.chr2R 17801142 96 - 21139217 ------UGCAGCA---GAGUGUUAAACAAUAAUAGGAAACGGCGCGCGGGCAUCAAUUAUAUGACAACCUCAGCCACACUCCAAGA---GGCUCUCCCCAUCU----CUGCU ------.((((..---((((((............(....)(((..(.((...(((......)))...)).).)))))))))..(((---((......)).)))----)))). ( -24.20, z-score = -0.89, R) >droEre2.scaffold_4845 12194512 94 - 22589142 ------UGCAGCA---GAGUGUUAAACAAUAAUAGGAAACGGCGCGCGGGCAUCAAUUAUAUGACAACCUCAGCCGCACUCCAAGA---GGCUCUCCCGGUCU----CCG-- ------.......---((((((............(....)(((..(.((...(((......)))...)).).)))))))))...((---((((.....)))))----)..-- ( -24.60, z-score = -0.52, R) >droAna3.scaffold_13266 9142334 103 + 19884421 ---CAAUGCGGCG---GAGUGUUAAACAAUAAUAGGAAACGGCGCGCGGGCAUCAAUUAUAUGACAACCUCAGCCACACUCCAAGA---GACUUGGCCCGACUUACCCUGGG ---...((.((((---((((((............(....)(((..(.((...(((......)))...)).).))))))))))(((.---..))).)))))............ ( -25.60, z-score = -0.08, R) >dp4.chr3 485765 106 + 19779522 ------UGCAGCAGCAGAGUGUUAAACAAUAAUAGGAAACGGCGCGCGGGCAUCAAUUAUAUGACAACUUCAGCCACACUCCAAGAUUCAGCCUCACUAGCCCACUCCCACU ------(((....)))(((((.............(....)(((....((((.(((......)))...(((.((.....))..))).....)))).....))))))))..... ( -18.80, z-score = 0.60, R) >droPer1.super_37 464060 106 + 760358 ------UGCAGCAGCAGAGUGUUAAACAAUAAUAGGAAACGGCGCGCGGGCAUCAAUUAUAUGACAACUUCAGCCACACUCCAAGAUUCAGCCUCACUAGCCCACUCCCACU ------(((....)))(((((.............(....)(((....((((.(((......)))...(((.((.....))..))).....)))).....))))))))..... ( -18.80, z-score = 0.60, R) >droWil1.scaffold_180699 1431994 96 - 2593675 GGCAGCAGCACCAACCGAGUGUUAAACAAUAAUAGCAAACGGCG---GGGCAUCAAUUAUAUGACAACCUCCGCCACACUCUCUAG-CACACAGAGUCUG------------ (((....((.((..(((..(((((........)))))..)))..---)))).(((......)))........))).((..((((..-.....))))..))------------ ( -23.10, z-score = -1.60, R) >droVir3.scaffold_12875 11716967 83 - 20611582 ------------CGGCGAGUGUUAAACAAUAAUAGCAAAUGGUG--CAGGCAUCAAUUAUAUGACAGCCUCCGCCACGC---GGAG-CACACUCAUCGGGA----------- ------------((..((((((((........)))).....(((--(.(((.(((......)))..)))(((((...))---))))-)))))))..))...----------- ( -25.20, z-score = -1.82, R) >droMoj3.scaffold_6496 11727349 78 + 26866924 -------------------UGUUAAACAAUAAUAGCAAAUGGUC--CGGGCAUCAAUUAUAUGACAGCCUCUGCCACGC---GGCA-CACACUCAGCUCAACU--------- -------------------...............((...((((.--.((((.(((......)))..))))..))))...---.)).-................--------- ( -13.70, z-score = 0.09, R) >consensus ______UGCAGCA___GAGUGUUAAACAAUAAUAGGAAACGGCGCGCGGGCAUCAAUUAUAUGACAACCUCAGCCACACUCCAAGA___GGCUCUCCCCGUCU____CUG__ ................((((((............(....)(((....(((..(((......)))...)))..)))))))))............................... (-12.91 = -12.44 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:42:35 2011