| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,632,593 – 3,632,647 |
| Length | 54 |
| Max. P | 0.924219 |
| Location | 3,632,593 – 3,632,647 |
|---|---|
| Length | 54 |
| Sequences | 5 |
| Columns | 54 |
| Reading direction | forward |
| Mean pairwise identity | 89.44 |
| Shannon entropy | 0.18628 |
| G+C content | 0.50000 |
| Mean single sequence MFE | -18.28 |
| Consensus MFE | -13.34 |
| Energy contribution | -13.42 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.58 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.31 |
| SVM RNA-class probability | 0.924219 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3632593 54 + 23011544 GCAGUGUAGCUUUAGAGUACCAAACCGGCGAACUGGUUUGGUCCUAAGUGACAG ....(((.((((.((.(.((((((((((....))))))))))))))))).))). ( -20.20, z-score = -3.08, R) >droSim1.chr2L 3591644 54 + 22036055 GCAGUGUAUCUUUACAGUGCCAAACCGGCGAACUGGUUUGGUCCUAAGUGACAG (((.((((....)))).)))((((((((....))))))))(((......))).. ( -19.50, z-score = -2.81, R) >droSec1.super_5 1733535 54 + 5866729 GCAGUGUAGAUUUAGAGUGCCAAACCGGCGAACUGGUUUGGUCAUAAGUGACAG ....(((..(((((....((((((((((....))))))))))..))))).))). ( -17.60, z-score = -2.85, R) >droYak2.chr2L 3626262 54 + 22324452 CCAGUGCAGUUAUAGAGCGCCAAACCGGCGAACUGGUUUGGUCCUAAGUGACAA ........(((((..((.((((((((((....)))))))))).))..))))).. ( -21.30, z-score = -3.52, R) >droEre2.scaffold_4929 3671299 54 + 26641161 CCAGUGCAGCUAUAGAGUGUCAAACCGACGAACUGGUUUGGUCCUAAGUGACAG ....((..(((....((..((((((((......))))))))..)).)))..)). ( -12.80, z-score = -0.66, R) >consensus GCAGUGUAGCUUUAGAGUGCCAAACCGGCGAACUGGUUUGGUCCUAAGUGACAG ...............((.((((((((((....)))))))))).))......... (-13.34 = -13.42 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:14:17 2011