| Sequence ID | dm3.chr2R |
|---|---|
| Location | 18,030,678 – 18,030,771 |
| Length | 93 |
| Max. P | 0.996384 |
| Location | 18,030,678 – 18,030,771 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 71.92 |
| Shannon entropy | 0.51796 |
| G+C content | 0.35806 |
| Mean single sequence MFE | -23.00 |
| Consensus MFE | -14.60 |
| Energy contribution | -15.93 |
| Covariance contribution | 1.34 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.92 |
| SVM RNA-class probability | 0.996384 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 18030678 93 - 21146708 GGAGAUAAAUGUAAGAUAUAUGCUUUGUUUUAAGCGC-------AGCAGAUGGAAAUCCGAGGGGAUUUUCAUGAAAAUGUGUUCCAGUUAC-UUUGGAAU .((((((((.(((.......)))))))))))..((((-------(....((((((((((....)))))))))).....)))))(((((....-.))))).. ( -24.40, z-score = -2.45, R) >droSim1.chr2R 16660283 93 - 19596830 GGCGAUAAAUGUAAGAUAAAUGCUUUGUCUUAAGCGA-------AGCAGAUGGAAAUCCGAGGGGAUUUUCAUGAAAAUGUGUUCCAGUUAC-UUUGGAAU .(((................((((((((.....))))-------)))).((((((((((....)))))))))).....)))(((((((....-.))))))) ( -26.50, z-score = -3.03, R) >droSec1.super_9 1341253 93 - 3197100 GGCGAUAAAUGUAAGAUAAAUGCUUUGUCUUAAGCGG-------AGGAGAUGGAAAUCCGAGGGGAUUUUCAUGAAAAUGUGUUCCAGUUAC-UUUGGAAU .((........((((((((.....)))))))).))..-------.....((((((((((....))))))))))........(((((((....-.))))))) ( -23.00, z-score = -1.75, R) >droYak2.chr2R 17775826 101 - 21139217 AGAGAUAAAUGUAAGAUAAAUGCUUUGUUUUAAGCCAGACAGAUGGCAGAUGGAAAUCCAAGGGGAUUUUCAUGAAAAUGAGUUCCAGUUACUUUUGGAAU .((((((((.(((.......)))))))))))..((((......))))..((((((((((....))))))))))........(((((((......))))))) ( -27.70, z-score = -3.22, R) >droEre2.scaffold_4845 12169869 93 - 22589142 AGCGAUAAAUGUAAGAUAAACGCUUUGUUUUAGGCGA-------GGCAGAUGGAAAUCCGAGGGGAUUUUCAUGAAAAUGAGUUCCAGUUAC-UUUGGAAU .....................(((((((.....))))-------)))..((((((((((....))))))))))........(((((((....-.))))))) ( -25.50, z-score = -2.72, R) >droGri2.scaffold_15245 11783616 70 + 18325388 -------------------ACACAUAGAUACGAGAGU-------UGCAGCU-AAAAUGCAUAUGUGUUUAAAUGUUAUUUUCUUUUCUUCGUUUUUU---- -------------------..((..(((...((((((-------.(((...-.((((((....))))))...))).))))))...)))..)).....---- ( -10.90, z-score = -0.55, R) >consensus GGCGAUAAAUGUAAGAUAAAUGCUUUGUUUUAAGCGA_______AGCAGAUGGAAAUCCGAGGGGAUUUUCAUGAAAAUGUGUUCCAGUUAC_UUUGGAAU ....................(((((......))))).............((((((((((....))))))))))........(((((((......))))))) (-14.60 = -15.93 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:42:32 2011