| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,999,997 – 18,000,090 |
| Length | 93 |
| Max. P | 0.808675 |
| Location | 17,999,997 – 18,000,090 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 83.67 |
| Shannon entropy | 0.29057 |
| G+C content | 0.70466 |
| Mean single sequence MFE | -45.73 |
| Consensus MFE | -33.76 |
| Energy contribution | -34.73 |
| Covariance contribution | 0.97 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.808675 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17999997 93 - 21146708 GCUAUUCCGCCACCCCCGGGACCACCACCGCCGCCAGGACCUCCACCGCCUCCGGCGAUGGGUGGUCUUAAAUUGGGCGGCGCGGGAGGAGCA------------ (((.((((((..((....)).........((((((((((((((((.((((...)))).)))).))))))......))))))))))))..))).------------ ( -46.90, z-score = -2.14, R) >droSim1.chr2R 16629478 93 - 19596830 GCUAUUCCGCCACCCCCGGGACCACCACCGCCGCCAGGACCUCCACCGCCUCCGGCGAUGGGUGGUCUUAAAUUGGGCGGCUCAGGAGGAGCA------------ (((.(((((((.(((..(((((((((..(((((..(((..........))).)))))...))))))))).....))).)))...)))).))).------------ ( -43.20, z-score = -1.88, R) >droSec1.super_9 1310529 93 - 3197100 GCUAUUCCACCACCCCCGGGACCACCACCGCCGCCAGGACCUCCACCGCCUCCGGCGAUGGGUGGUCUUAAAUUGGGCGGCGCAGGAGAAGCA------------ (((.((((....((....))........(((((((((((((((((.((((...)))).)))).))))))......)))))))..)))).))).------------ ( -43.40, z-score = -2.61, R) >droYak2.chr2R 9961078 96 + 21139217 GCUAUUCCGCCACCCCCGGGACCACCGCCGCCGCCAGGACCUCCACCGCCUCCGGCGAUGGGCGGUCUUAAAUUGGGCGGCGCAGGAGGAGGAGCA--------- (((.((((.((.....(((.....))).(((((((((((((((((.((((...)))).)))).))))))......)))))))..)).)))).))).--------- ( -47.80, z-score = -1.75, R) >droEre2.scaffold_4845 12138884 96 - 22589142 GCUAUUCCGCCACCCCCGGGACCACCGCCGCCGCCAGGACCUCCGCCGCCUCCGGCGAUGGGCGGUCUUAAAUUGGGCGGCGCAGGAGGAGGAGCA--------- (((.((((.((.....(((.....))).(((((((((((((((((.((((...)))).)))).))))))......)))))))..)).)))).))).--------- ( -47.10, z-score = -1.01, R) >droMoj3.scaffold_6496 11645450 105 + 26866924 GCCAUACCGCCCCCACCGGGUCCUCCGCCACCGCCAGGACCGCCACCGCCACCGGGCUUGAGCGGCCUCAAGCUAGGUUGUGGAGGAGGAAGAGGAAGAGGAGCG .......((((((....)))(((((..((.((....)).((.((.((((.(((.((((((((....)))))))).))).)))).)).))....))..)))))))) ( -46.00, z-score = -1.31, R) >consensus GCUAUUCCGCCACCCCCGGGACCACCACCGCCGCCAGGACCUCCACCGCCUCCGGCGAUGGGCGGUCUUAAAUUGGGCGGCGCAGGAGGAGCA____________ ....((((.((......((.....))..(((((((((((((((((.((((...)))).)))).))))))......)))))))..)).)))).............. (-33.76 = -34.73 + 0.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:42:32 2011