Locus 5137

Sequence ID dm3.chr2R
Location 17,974,969 – 17,975,030
Length 61
Max. P 0.546667
window7048

overview

Window 8

Location 17,974,969 – 17,975,030
Length 61
Sequences 6
Columns 66
Reading direction forward
Mean pairwise identity 79.79
Shannon entropy 0.37180
G+C content 0.58373
Mean single sequence MFE -21.13
Consensus MFE -15.38
Energy contribution -14.55
Covariance contribution -0.83
Combinations/Pair 1.50
Mean z-score -1.11
Structure conservation index 0.73
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.11
SVM RNA-class probability 0.546667
Prediction RNA
WARNING Out of training range. z-scores are NOT reliable.

Download alignment: ClustalW | MAF

>dm3.chr2R 17974969 61 + 21146708
GUGCUGUGCCAGGUGCUACAUAUCAGGUGUCAGGCACCAGGUGUCGUGUCGU-----UUGGCGGUG
......(((((..((.((((((((.((((.....)))).))))).))).)).-----.)))))... ( -22.00, z-score =  -0.97, R)
>droSim1.chr2R 16605691 61 + 19596830
GUGCUGUUCCAGGUGCUACAUAUCAGGUGUCAGGCACCAGGUAUCGUGUCGU-----UUGGCGGUG
..((((..(((..((.((((((((.((((.....)))).))))).))).)).-----.))))))). ( -20.30, z-score =  -1.38, R)
>droSec1.super_9 1286803 61 + 3197100
GUGCUGUUCCAGGUGCUACAUAUCAGGUGUCAGGCACCAGGUGUCGUGUCGU-----UUGGCGGUG
..((((..(((..((.((((((((.((((.....)))).))))).))).)).-----.))))))). ( -20.30, z-score =  -1.10, R)
>droYak2.chr2R 9935732 66 - 21139217
AUACUGUGCCAGGUGCCACAUAUCAGGUGUCAGGCACCAGGUGUCGUGUCGUGUCGCUUGGCGGUG
......(((((((((.((((((((.((((.....)))).)))))......))).)))))))))... ( -24.70, z-score =  -0.93, R)
>droEre2.scaffold_4845 12113507 61 + 22589142
CUGCUGUGCCAGGUGCUACAUAUCAGGUGUCAGGCACCAGGUGUCGUGUCGU-----UUGGCGGUG
......(((((..((.((((((((.((((.....)))).))))).))).)).-----.)))))... ( -22.00, z-score =  -0.98, R)
>droAna3.scaffold_13266 11340071 50 + 19884421
GCGAGGUGCCAGGAGCCAGGUAUCAGCUAUCAGGUGUCAGGUGCUUUGGC----------------
.(((((..((.(..(((.((((.....)))).)))..).))..)))))..---------------- ( -17.50, z-score =  -1.32, R)
>consensus
GUGCUGUGCCAGGUGCUACAUAUCAGGUGUCAGGCACCAGGUGUCGUGUCGU_____UUGGCGGUG
.(((.(..((.((((((((((.....))))..)))))).))..).))).................. (-15.38 = -14.55 +  -0.83)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:42:30 2011