Locus 5136

Sequence ID dm3.chr2R
Location 17,968,176 – 17,968,267
Length 91
Max. P 0.693826
window7047

overview

Window 7

Location 17,968,176 – 17,968,267
Length 91
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 66.76
Shannon entropy 0.44175
G+C content 0.31656
Mean single sequence MFE -22.59
Consensus MFE -8.93
Energy contribution -10.93
Covariance contribution 2.00
Combinations/Pair 1.09
Mean z-score -2.23
Structure conservation index 0.40
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.43
SVM RNA-class probability 0.693826
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 17968176 91 + 21146708
AAAAGAAUCAAAAACUUUGUGGUAUUAAAUUAACCCCAAAUUUGAGCUCAUUUGAGCUAUUACGAAGUGC---------------ACAAAAUAACUUAACUUAGCA--------------
.............((((((((((((((((((.......)))))))((((....)))))))))))))))..---------------.....................-------------- ( -17.20, z-score =  -2.34, R)
>droEre2.scaffold_4845 12106601 120 + 22589142
CAAGGAAUCGACAACCUUGUGGUAAAAAAUAAACAGCAAAUUUAAACUCAUUUCAGUUAUUACUAAGUGCGAGUUAAAGUUUAUCACGAAAUUGAGUAGCAGUGCCUGCUUUGCUUAGUA
.((((.........))))((((((((...(((...(((......((((......)))).........)))...)))...))))))))...((((((((((((...)))))..))))))). ( -23.16, z-score =  -0.25, R)
>droSim1.chr2R 16598235 106 + 19596830
CAAGGAAUCGAAAACUUGGUGGUAAAAAAUUAACUCCAAAUGUAAGCUCAUUUGAGCUAUUACUAAGUGCGAGUUAAAGUUUAUCACAAAAUAAAUUAGCUGAACA--------------
((((..........))))((((((((...(((((((((...((((((((....)))))..)))....)).)))))))..))))))))...................-------------- ( -27.40, z-score =  -4.08, R)
>consensus
CAAGGAAUCGAAAACUUUGUGGUAAAAAAUUAACACCAAAUUUAAGCUCAUUUGAGCUAUUACUAAGUGCGAGUUAAAGUUUAUCACAAAAUAAAUUAGCUGAGCA______________
.......(((...((((((((((...(((((.......))))).(((((....))))))))))))))).)))................................................ ( -8.93 = -10.93 +   2.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:42:30 2011