| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,934,921 – 17,934,998 |
| Length | 77 |
| Max. P | 0.593815 |
| Location | 17,934,921 – 17,934,998 |
|---|---|
| Length | 77 |
| Sequences | 9 |
| Columns | 81 |
| Reading direction | reverse |
| Mean pairwise identity | 91.16 |
| Shannon entropy | 0.18907 |
| G+C content | 0.31457 |
| Mean single sequence MFE | -13.80 |
| Consensus MFE | -10.18 |
| Energy contribution | -10.14 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.593815 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2R 17934921 77 - 21146708 GGAAAGCUGCAAGGUAAA--CCAAAGAGAAAA--UCAUUAAUAAAGCAGCUUAAAAUUGCAUUAACACUGCAAAUUUAUAC ...(((((((..((....--))...((.....--)).........)))))))....(((((.......)))))........ ( -16.60, z-score = -3.06, R) >droSim1.chr2R 16564609 77 - 19596830 GGAAAGCGGCAAGGUAAA--CCAAAGAGAAAA--UCAUUAAUAAAGCAGCUUAAAAUUGCAUUAACACUGCAAAUUUAUAC ...((((.((..((....--))...((.....--)).........)).))))....(((((.......)))))........ ( -12.00, z-score = -1.47, R) >droSec1.super_9 1247015 77 - 3197100 GGAAAGCGGCAAGGUAAA--CCAAAGAGAAAA--UCAUUAAUAAAGCAGCUUAAAAUUGCAUUAACACUGCAAAUUUAUAC ...((((.((..((....--))...((.....--)).........)).))))....(((((.......)))))........ ( -12.00, z-score = -1.47, R) >droYak2.chr2R 9894954 77 + 21139217 UGAAAGCUGGAAGGUAAA--CCAAAGGAAAAA--UCAUUAAUAAAGCAGCUUAAAAUUGCAUUAACACUGCAAAUUUAUAC ...((((((...((....--))....((....--))..........))))))....(((((.......)))))........ ( -11.80, z-score = -0.91, R) >droEre2.scaffold_4845 12070568 77 - 22589142 UGAAAGCUGUAAGGUAAA--CCAAAGAGAAAA--UCAUUAAUAAAGCAGCUUAAAAUUGCAUUAACACUGCAAAUUUAUAC ...(((((((..((....--))...((.....--)).........)))))))....(((((.......)))))........ ( -14.30, z-score = -1.93, R) >droAna3.scaffold_13266 11305177 76 - 19884421 -GAGAGCUGAAAGGUAAA--CCAGAGAGAAAA--UCAUUAAUAAAGCAGCUUAAAAUUGCAUUAACACGGCAAAUUUAUAC -..((((((...((....--))...((.....--))..........))))))....((((.........))))........ ( -11.50, z-score = -1.75, R) >dp4.chr3 15501697 77 - 19779522 GGAAAGCUGUAAGGUAAA--CCAAAGAGAAAA--UCAUUAAUAAAGCAGCUUAACAUUGCAUUAACACUGCAAAUUUAUAC (..(((((((..((....--))...((.....--)).........)))))))..).(((((.......)))))........ ( -15.40, z-score = -2.77, R) >droPer1.super_4 3617968 77 + 7162766 GGAAAGCUGUAAGGUAAA--CCAAAGAGAAAA--UCAUUAAUAAAGCAGCUUAACAUUGCAUUAACACUGCAAAUUUAUAC (..(((((((..((....--))...((.....--)).........)))))))..).(((((.......)))))........ ( -15.40, z-score = -2.77, R) >droWil1.scaffold_180701 3337475 81 - 3904529 GGCCAAUUGCCAGGUAAAAGCCAAUGAAGAAAAUUCAUUAAUAAAGCGGUUUAAAAUUGCAUUAACACUGCAAAUUUUCAG (((.....))).(((....)))((((((.....))))))......(((((((((.......)))).))))).......... ( -15.20, z-score = -1.14, R) >consensus GGAAAGCUGCAAGGUAAA__CCAAAGAGAAAA__UCAUUAAUAAAGCAGCUUAAAAUUGCAUUAACACUGCAAAUUUAUAC ...(((((((..((......))...((.......)).........)))))))....(((((.......)))))........ (-10.18 = -10.14 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:42:25 2011