| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,921,588 – 17,921,638 |
| Length | 50 |
| Max. P | 0.907743 |
| Location | 17,921,588 – 17,921,638 |
|---|---|
| Length | 50 |
| Sequences | 5 |
| Columns | 50 |
| Reading direction | forward |
| Mean pairwise identity | 92.40 |
| Shannon entropy | 0.13493 |
| G+C content | 0.41200 |
| Mean single sequence MFE | -9.78 |
| Consensus MFE | -9.70 |
| Energy contribution | -9.50 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.99 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.19 |
| SVM RNA-class probability | 0.907743 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17921588 50 + 21146708 AAUUGAAUCAAUUUGCUGACUUCUUGCUGAAACGGCGUUAAAUUCGAUGG .(((((((.....(((((..(((.....))).)))))....))))))).. ( -10.10, z-score = -1.86, R) >droSim1.chr2R_random 2717128 50 + 2996586 AAUUGAAUCAAUUUGCUGACUUCUUGCUGAAACGGCGAUAAAUUCGGUGG .(((((((....((((((..(((.....))).))))))...))))))).. ( -11.10, z-score = -2.15, R) >droSec1.super_9 1233388 50 + 3197100 AAUCGAAUCAAUUUGCUGACUUCUUGCUGAAACGGCGAUAAAUUUGGUGG .(((((((....((((((..(((.....))).))))))...))))))).. ( -11.00, z-score = -2.10, R) >droYak2.chr2R 9881144 50 - 21139217 AAUUGAAUCAAUUUGCUGACUUCUGGCUGAAACGGCGAUAAAUGCGGUGG .((((.......((((((..(((.....))).))))))......)))).. ( -7.92, z-score = -0.30, R) >droEre2.scaffold_4845 12056876 50 + 22589142 AAUUGAAUCAAUUCGCUGACUUCUGGCUGCAAUGGCGAUAAAUUCGGUGG .(((((((....(((((................)))))...))))))).. ( -8.79, z-score = -0.28, R) >consensus AAUUGAAUCAAUUUGCUGACUUCUUGCUGAAACGGCGAUAAAUUCGGUGG .(((((((....((((((..(((.....))).))))))...))))))).. ( -9.70 = -9.50 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:42:23 2011