| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,911,793 – 17,911,919 |
| Length | 126 |
| Max. P | 0.678594 |
| Location | 17,911,793 – 17,911,919 |
|---|---|
| Length | 126 |
| Sequences | 5 |
| Columns | 150 |
| Reading direction | reverse |
| Mean pairwise identity | 79.51 |
| Shannon entropy | 0.32899 |
| G+C content | 0.28444 |
| Mean single sequence MFE | -24.20 |
| Consensus MFE | -14.96 |
| Energy contribution | -15.64 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.678594 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17911793 126 - 21146708 CAGUCUGGGAUUAUUUACAAUCGAUACAAAAAAAUACAAGCUUAUUGUGUGGUAAAAAAUUACAGAGUAUCGGAUUAAUUCCAGGCUCGUUUAAUAAUCUCCUUAUUGAAAGAAUAUAUGAAAUAA------------------------ ..(((((((((((.......(((((((......((((((.....)))))).((((....))))...)))))))..)))))))))))((.((((((((.....)))))))).)).............------------------------ ( -29.80, z-score = -3.60, R) >droSim1.chr2R 16553429 124 - 19596830 CAGUCUGGGAUUAUUUACAAUCGAU--AAAAAAAUAUAAGCUUAUUUCGUGGUAAAAAAUUACAGAGUAUCGGAUUAAUUUCAGGCUCGUUUAAUAAUCACCUUAUUGAAAGUAUAUACGAAAUAA------------------------ .((((((..((((.......(((((--(...(((((......))))).(((((.....)))))....))))))..))))..))))))..((((((((.....))))))))................------------------------ ( -20.40, z-score = -0.97, R) >droSec1.super_9 1223783 148 - 3197100 CAGUCUGGGAUUAUUUACAAUCGAU--AAAAAAAUACAAGCUUAUUGUGUGGUAAAAAAUUACAGAGUAUCGGAUUAAUUUCAGGCUCGUUUAAUAAUCACCUUAUUGAAAGUAUACGAAAUAUGAAAUAUGAAAGUAUAUACGAAAUAA ..(((((..((((.......(((((--(.....((((((.....)))))).((((....))))....))))))..))))..)))))(((((((((((.....)))))))..((((((...((((...))))....))))))))))..... ( -28.00, z-score = -1.87, R) >droYak2.chr2R 9870717 124 + 21139217 CAGUCUGGGAUUAUUUAUAAUCGAU--GAAAAAAUACAAGCUUGUGGCGUGAUAAAAAAUUACAGAGUAUCGGAUUAAUUCCGGACUCGUUUAAUAAUCUCCUUAUUUAAAGAAUUUUCAAUAUAA------------------------ .((((((((((((.......(((((--(...........((.....))(((((.....)))))....))))))..)))))))))))).......................................------------------------ ( -22.20, z-score = -0.73, R) >droEre2.scaffold_4845 12046898 116 - 22589142 --------GAUUGCUUACAAUCGAUA-CAAAAAAUACAAGCUUA-UGCGUAAUAAAAAUUUACAGAGUAUCGGAUUAACUCCAGGCUCGUUUAAUAAUCUCCUUAUUCAAGGAAUAUACGAAAUAA------------------------ --------(((((....)))))((((-(...........((...-.))((((.......))))...)))))(((.....)))....((((...(((...(((((....))))).))))))).....------------------------ ( -20.60, z-score = -2.07, R) >consensus CAGUCUGGGAUUAUUUACAAUCGAU__AAAAAAAUACAAGCUUAUUGCGUGGUAAAAAAUUACAGAGUAUCGGAUUAAUUCCAGGCUCGUUUAAUAAUCUCCUUAUUGAAAGAAUAUACGAAAUAA________________________ ((((..(((((((((.((..............................(((((.....))))).((((...(((.....)))..))))))..))))))).))..)))).......................................... (-14.96 = -15.64 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:42:17 2011