| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,889,231 – 17,889,324 |
| Length | 93 |
| Max. P | 0.770746 |
| Location | 17,889,231 – 17,889,324 |
|---|---|
| Length | 93 |
| Sequences | 7 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 75.49 |
| Shannon entropy | 0.48484 |
| G+C content | 0.51408 |
| Mean single sequence MFE | -20.04 |
| Consensus MFE | -11.88 |
| Energy contribution | -12.11 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.770746 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17889231 93 + 21146708 GCAAAGUCAACGUCAUGGCUAUCAAUUUACCCCGUUCCCAAAUUGCUCCGCCGGCCAUGAUGGCCACAUAAACCUCGUUGGCCAUUUUCCAUC .....(((((((....(((...((((((...........))))))....)))((((.....))))..........)))))))........... ( -22.20, z-score = -1.96, R) >dp4.chr3 15451864 75 + 19779522 --AGAGUCAGCUUCAUCAUAAUGCCCCUGCACCCGGGCC---------------CUGCCACAGCCACAUAAGCCCGAUGGGGUAUUUUUCCA- --.................((((((((......(((((.---------------..((....)).......)))))..))))))))......- ( -18.30, z-score = 0.27, R) >droAna3.scaffold_13266 11264115 73 + 19884421 GCAAAGUCAACGUCAUGGUUAUCAAUUUGCUCUG--------------------CCGUGAUGGCCACAUAAACCCUGUUGGCCGUUUUCCAUC ........(((((((((((..............)--------------------)))))))(((((((.......)).))))))))....... ( -18.04, z-score = -1.40, R) >droEre2.scaffold_4845 12024049 93 + 22589142 GCAAAGUCAACGUCAUGGCUAUCAAUUCACCCCGUUCCCAAAUUGCUGCGCCAUCCAUGAUGGCCACAUAAACCUCGUUGGCCGUUUUCCAUC .....(((((((...(((((((((........(((..(......)..))).......))))))))).........)))))))........... ( -19.56, z-score = -1.19, R) >droYak2.chr2R 9847316 93 - 21139217 GCAAAGUCAACGUCAUGGCUAUCAAUUCUCCCCGUUCCCAAAUUGCGCCGCCGUCCAUGAUGGCCACAUAAACCUCGUUGGCCAUUUUCCAUC .....(((((((....(((...(((((.............))))).)))((((((...))))))...........)))))))........... ( -20.12, z-score = -1.73, R) >droSec1.super_9 1201215 93 + 3197100 GCAAAGUCAACGUCAUGGCUAUCAAUUCACCCCGUUCCCAAAUUGCUCCGCCGGCCAUGAUGGCCACAUAAACCUCGUUGGCCAUUUUCCAUC .....(((((((....(((...(((((.............)))))....)))((((.....))))..........)))))))........... ( -21.02, z-score = -1.51, R) >droSim1.chr2R 16530188 93 + 19596830 GCAAAGUCAACGUCAUGGCUAUCAAUUCACCCCGUUCCCAAAUUGCUCCGCCGGCCAUGAUGGCCACAUAAACCUCGUUGGCCAUUUUCCAUC .....(((((((....(((...(((((.............)))))....)))((((.....))))..........)))))))........... ( -21.02, z-score = -1.51, R) >consensus GCAAAGUCAACGUCAUGGCUAUCAAUUCACCCCGUUCCCAAAUUGCUCCGCCGGCCAUGAUGGCCACAUAAACCUCGUUGGCCAUUUUCCAUC .....(((((((...(((((((((.................................))))))))).........)))))))........... (-11.88 = -12.11 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:42:14 2011