| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,873,065 – 17,873,168 |
| Length | 103 |
| Max. P | 0.909900 |
| Location | 17,873,065 – 17,873,168 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 61.40 |
| Shannon entropy | 0.69334 |
| G+C content | 0.30134 |
| Mean single sequence MFE | -17.61 |
| Consensus MFE | -8.40 |
| Energy contribution | -8.43 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.06 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.21 |
| SVM RNA-class probability | 0.909900 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17873065 103 + 21146708 CUAAUAGGAUUUGACAGUGUUCAAAUCGCAUUUUAUUGAAUAAUUUGUAAAAAAACUGUACGUU------------UAUUUGGAAUACUUUCAU-GCUGAGAGUAUUUAUUCUGAU ...(((((((((((......)))))))(((..((((...))))..))).......)))).....------------......((((((((((..-...))))))))))........ ( -20.10, z-score = -1.46, R) >droEre2.scaffold_4845 12007550 94 + 22589142 --------------CAGCGUUCAAAUCGCAGUUUAUCA---AAUUUGUUAAUCAACUUUAAAGUAC----UGUUGAUCUUCGGAAUACUUUCAU-GCUGAGAGUAUUUAUUCUCAU --------------..(((.......))).........---.........((((((..........----.)))))).....((((((((((..-...))))))))))........ ( -17.30, z-score = -1.38, R) >droYak2.chr2R 9830006 93 - 21139217 --------------UAAGGUUCAUAUCGCACUCUAUC----AAUUUGUAAACGAACUCCACAAUGC----UGUUUAUCUUUGGAAUACUUUUAU-GCUGAGAGUAUUUAUUCUCAU --------------.(((((....((.(((.......----..((((....))))........)))----.))..)))))..((((((((((..-...))))))))))........ ( -11.03, z-score = 0.66, R) >droSec1.super_9 1185132 95 + 3197100 CUAAUAGGAUUUGUCAGUGUUCAAAUCGCAUUUCAUCGCAUAAUUUGUAAAAUAACUGUACA--------------------GAAUACUUUCAU-GCUGAGAGUAUUUAUUCUCAU .....(((((.(((((((.(((((((.((........))...))))).))....)))).)))--------------------((((((((((..-...)))))))))))))))... ( -18.60, z-score = -1.57, R) >droSim1.chr2R 16513451 115 + 19596830 CUAAUAGGAUUUGGCAGUGUUCAAAUCGCAUUUCAUCGCAUAAUUUGUAAAAUAACUUUACGCUACACUGUUUGUUUAUCUGGAAUACUUUCAU-GCUGAGAGUAUUUAUUCUCAU ......((((..((((((((.(.....((........)).......(((((.....))))))..)))))))).....)))).((((((((((..-...))))))))))........ ( -24.60, z-score = -2.04, R) >droGri2.scaffold_14906 13468816 86 + 14172833 -----AAUAAUAGGAAGUAUUCUUAUCACAAACAAUUU--UAAUUAGGUAA-CAGCUGCAAA--------------------AGCUGUUUUAAUUGUUGUCAACAAAU-UUUGCA- -----....((((((.....)))))).....(((((..--.((((((..((-(((((.....--------------------))))))))))))))))))........-......- ( -14.00, z-score = -0.57, R) >consensus _____AGGAUUUG_CAGUGUUCAAAUCGCAUUUUAUCG__UAAUUUGUAAAACAACUGUACA_U____________U_UUUGGAAUACUUUCAU_GCUGAGAGUAUUUAUUCUCAU ..................................................................................(((((((((((....)))))))))))........ ( -8.40 = -8.43 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:42:13 2011