| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,870,044 – 17,870,146 |
| Length | 102 |
| Max. P | 0.660210 |
| Location | 17,870,044 – 17,870,146 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 83.26 |
| Shannon entropy | 0.30874 |
| G+C content | 0.54483 |
| Mean single sequence MFE | -33.45 |
| Consensus MFE | -24.80 |
| Energy contribution | -25.42 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.660210 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17870044 102 - 21146708 ACAAAGAG-GGUUUCGGUUGGAAAA-UGGUCGGAAAAGGGGGGGCUGUGUUUGCGACUGACCCAGAAAAUGGGCGGCUAAAGAAAUGCUGGCCAGGAUUCUGGC------ ........-....(((((((.((((-(((((...........)))))).))).))))))).((((((..(((.((((.........)))).)))...)))))).------ ( -32.00, z-score = -1.71, R) >droEre2.scaffold_4845 12004573 102 - 22589142 ACAAAGAG-GGUUUCGGUUGGAAAAGCGGUCGGAAAA-GCGGGGCUGUGCUUGCGACUGACCCAGAAAAUGGGCGGCUAAAGAAAUGCUGGCCAGGAUUCUGGC------ ........-....(((((((.((..((((((......-....))))))..)).))))))).((((((..(((.((((.........)))).)))...)))))).------ ( -35.30, z-score = -1.68, R) >droYak2.chr2R 9826985 102 + 21139217 ACAAAGAG-GGUUUCGGUUGGAAAAGUGGUCGGAAAA-GCGGGACUGUGCUUGCGACUGACCCAGAAAAUGGGCGGCUAAAGAAAUGCUGGCCAGGAUUCUGGC------ ........-....(((((((.((..(..(((......-....)))..)..)).))))))).((((((..(((.((((.........)))).)))...)))))).------ ( -33.00, z-score = -1.64, R) >droSec1.super_9 1182103 101 - 3197100 ACAAAGAG-GGUUUCGGUUGGAAAA-UGGUCGGAAAA-GGGGGGCUGUGUUUGCGACUGACCCAGAAAAUGGGCGGCUAAAGAAAUGCUGGCCAGGAUUCUGGC------ ........-....(((((((.((((-(((((......-....)))))).))).))))))).((((((..(((.((((.........)))).)))...)))))).------ ( -32.10, z-score = -1.87, R) >droSim1.chr2R 16510396 101 - 19596830 ACAAAGAG-GGUUUCGGUUGGAAAA-UGGUCGGAAAA-GGGGGGCUGUGUUUGCGACUGACCCAGAAAAUGGGCGGCUAAAGAAAUGCUGGCCAGGAUUCUGGC------ ........-....(((((((.((((-(((((......-....)))))).))).))))))).((((((..(((.((((.........)))).)))...)))))).------ ( -32.10, z-score = -1.87, R) >droAna3.scaffold_13266 11244832 103 - 19884421 ACAACGGGCGGCUAAGGGCGGGGGUGUGGC---ACAUUUAGGGGGUGGCCCCGUGA-UGACCCAGAAAGCGGGCGGCAAAAGAAAG---AGCUAGCAUUUUGGCUGGCUC .......((.(((....((..((((....(---((.....((((....))))))).-..)))).....)).))).))........(---(((((((......)))))))) ( -36.20, z-score = -0.17, R) >consensus ACAAAGAG_GGUUUCGGUUGGAAAA_UGGUCGGAAAA_GGGGGGCUGUGCUUGCGACUGACCCAGAAAAUGGGCGGCUAAAGAAAUGCUGGCCAGGAUUCUGGC______ .............(((((((.(((...((((...........))))...))).))))))).((((((..(((.((((.........)))).)))...))))))....... (-24.80 = -25.42 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:42:12 2011