| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,852,779 – 17,852,878 |
| Length | 99 |
| Max. P | 0.986975 |
| Location | 17,852,779 – 17,852,878 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 71.86 |
| Shannon entropy | 0.52402 |
| G+C content | 0.43114 |
| Mean single sequence MFE | -19.13 |
| Consensus MFE | -12.09 |
| Energy contribution | -13.48 |
| Covariance contribution | 1.39 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.26 |
| SVM RNA-class probability | 0.986975 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17852779 99 - 21146708 GAAUUUCCCCCCCCCCCCACGACCCUCACAGCUA----GUGUGUGUGUAAUCCUGUUUGUCAUGUCAUGUCAGUUUUAAGGAUUUAUUGCACCGCACAAAAAU ..................................----(((((.((((((((((..(((.(((...))).))).....)))))....))))))))))...... ( -18.80, z-score = -1.96, R) >droAna3.scaffold_13266 11224368 81 - 19884421 -------------------GGAGUCUCCCUCCUC---CCCGAGUGUGUAAUCCUGUUUGUCAUGUCAUGUCAGUUUUAAGGAUUUAUUGCACCGCACAAAAAU -------------------((((.....))))..---..((.(((((.((((((..(((.(((...))).))).....))))))...)))))))......... ( -17.70, z-score = -2.05, R) >droYak2.chr2R 9808840 81 + 21139217 --------------------GAAUCUUCCCACUA--GUGUGUGUGUGUAAUCCUGUUUGUCAUGUCAUGUCAGUUUUAAGGAUUUAUUGCACCGCACAAAAAU --------------------..............--(((((.(((((.((((((..(((.(((...))).))).....))))))...))))))))))...... ( -20.30, z-score = -2.76, R) >droSec1.super_9 1165289 94 - 3197100 GAAUUUCCCCCCUUCGC-----CCCUCGCAGCUA----GUGUGUGUGUAAUCCAGUUUGUCAUGUCAUGUCAGUUUUAAGGAUUUAUUGCACCGCACAAAAAU ...............((-----.....)).....----(((((.(((((((((...(((.(((...))).)))......))))....))))))))))...... ( -16.80, z-score = -1.20, R) >droSim1.chr2R 16488680 94 - 19596830 GAAUUUCCCCCCUUCAC-----CCCUAGCAGCUA----GUGUGUGUGUAAUCCUGUUUGUCAUGUCAUGUCAGUUUUAAGGAUUUAUUGCACCGCACAAAAAU .................-----............----(((((.((((((((((..(((.(((...))).))).....)))))....))))))))))...... ( -18.80, z-score = -1.98, R) >droWil1.scaffold_180701 3212295 97 - 3904529 GCAAUUUAAGCCUUGCCCAGGAAUCAGACUGAGGCCCAACUUUAGUGUAAUCCUGUUUGUCAUGUCAUGUCAGUUUUAAGGAUUUAUUGCCCUACAC------ (((((.....(((((..(((((...(.(((((((.....))))))).)..))))).(((.(((...))).)))...)))))....))))).......------ ( -22.40, z-score = -1.11, R) >consensus GAAUUUCCCCCCUUC_C___GACCCUCACAGCUA____GUGUGUGUGUAAUCCUGUUUGUCAUGUCAUGUCAGUUUUAAGGAUUUAUUGCACCGCACAAAAAU ......................................(((((.((((((((((..(((.(((...))).))).....)))))....))))))))))...... (-12.09 = -13.48 + 1.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:42:08 2011