| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,848,361 – 17,848,467 |
| Length | 106 |
| Max. P | 0.680134 |
| Location | 17,848,361 – 17,848,467 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 73.76 |
| Shannon entropy | 0.43728 |
| G+C content | 0.55413 |
| Mean single sequence MFE | -31.94 |
| Consensus MFE | -14.74 |
| Energy contribution | -16.34 |
| Covariance contribution | 1.60 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.680134 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17848361 106 + 21146708 CGAGCACCGAGCACCGAGCUCCUAGCUCCUAGCUCCUAGCCACUGUGAGCCACCGUUUCGCAAAUAGUGCAAAUAACUAUACCAGUGGCUGCAGCUAGCGCAACAU---------- .((((...((((.....))))...))))((((((.(.((((((((((((.......)))))..(((((.......)))))...)))))))).))))))........---------- ( -36.40, z-score = -2.97, R) >droSim1.chr2R 16483970 99 + 19596830 -------CGAGCACCGAGCACCGAGCUCCUAGCUCCUAGCCACUCUGAGCCACCGUUUCGCAAAUAGUGCAAAUAACUAUACCAGUGGCUGCAGCUAGCGCAACAU---------- -------...((...((((.....))))((((((.(.(((((((....((.........))..(((((.......)))))...)))))))).)))))).)).....---------- ( -29.50, z-score = -1.83, R) >droSec1.super_9 1160875 99 + 3197100 -------CGAGCACAGAGCACAGAGCUCCUAGCUCCUAGCCACUCUGAGCCACCGUUUCGCAAAUAGUGCAAAUAACUAUACCAGUGGCUGCAGCUAGCGCAACAU---------- -------...((...((((.....))))((((((.(.(((((((....((.........))..(((((.......)))))...)))))))).)))))).)).....---------- ( -29.40, z-score = -1.52, R) >droEre2.scaffold_4845 11980259 102 + 22589142 ----CAAGCACCACCGAGCACCGAGCACCCCACUCCGUGCCACUCGGAGCCACUGUUGCGCAAAUAGUGCAAAUAACUAUACCAGUGGCUGCAGCUAGCGCAACAU---------- ----...((....((((((((.(((.......))).))))...))))((((((((((((((.....))))))..........)))))))))).((....)).....---------- ( -35.20, z-score = -3.21, R) >droAna3.scaffold_13266 11220167 101 + 19884421 -----------CGCCGACCGGGGAGCCGCUGG----GAGCCACUCGGAGCCACUGCUGCACAAAUAGCGCAAAUAGCAAUAACAUCAGCUACAUCUACGGCCGGGGACAAGAACAA -----------(.(((.(((..((...(((((----(..((....))..))...((((......))))((.....))........))))....))..))).))).).......... ( -29.20, z-score = -0.24, R) >consensus _______CGAGCACCGAGCACCGAGCUCCUAGCUCCUAGCCACUCUGAGCCACCGUUUCGCAAAUAGUGCAAAUAACUAUACCAGUGGCUGCAGCUAGCGCAACAU__________ ........................((..((((((...(((((((..((((....))).)....(((((.......)))))...)))))))..)))))).))............... (-14.74 = -16.34 + 1.60)
| Location | 17,848,361 – 17,848,467 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 73.76 |
| Shannon entropy | 0.43728 |
| G+C content | 0.55413 |
| Mean single sequence MFE | -40.10 |
| Consensus MFE | -22.69 |
| Energy contribution | -24.12 |
| Covariance contribution | 1.43 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.569328 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17848361 106 - 21146708 ----------AUGUUGCGCUAGCUGCAGCCACUGGUAUAGUUAUUUGCACUAUUUGCGAAACGGUGGCUCACAGUGGCUAGGAGCUAGGAGCUAGGAGCUCGGUGCUCGGUGCUCG ----------........((((((.(((((((((....(((((((((((.....)))))....))))))..)))))))).).))))))((((...((((.....))))...)))). ( -44.80, z-score = -1.98, R) >droSim1.chr2R 16483970 99 - 19596830 ----------AUGUUGCGCUAGCUGCAGCCACUGGUAUAGUUAUUUGCACUAUUUGCGAAACGGUGGCUCAGAGUGGCUAGGAGCUAGGAGCUCGGUGCUCGGUGCUCG------- ----------........(((((..((((((((((((....)))(((((.....)))))..))))))))....)..)))))((((...((((.....))))...)))).------- ( -38.60, z-score = -1.12, R) >droSec1.super_9 1160875 99 - 3197100 ----------AUGUUGCGCUAGCUGCAGCCACUGGUAUAGUUAUUUGCACUAUUUGCGAAACGGUGGCUCAGAGUGGCUAGGAGCUAGGAGCUCUGUGCUCUGUGCUCG------- ----------........(((((..((((((((((((....)))(((((.....)))))..))))))))....)..)))))((((..(((((.....)))))..)))).------- ( -40.10, z-score = -1.70, R) >droEre2.scaffold_4845 11980259 102 - 22589142 ----------AUGUUGCGCUAGCUGCAGCCACUGGUAUAGUUAUUUGCACUAUUUGCGCAACAGUGGCUCCGAGUGGCACGGAGUGGGGUGCUCGGUGCUCGGUGGUGCUUG---- ----------.(((((((((((.(((((..((((...))))...))))))))...))))))))..(((.(((...(((((.((((.....)))).)))))...))).)))..---- ( -40.10, z-score = -0.68, R) >droAna3.scaffold_13266 11220167 101 - 19884421 UUGUUCUUGUCCCCGGCCGUAGAUGUAGCUGAUGUUAUUGCUAUUUGCGCUAUUUGUGCAGCAGUGGCUCCGAGUGGCUC----CCAGCGGCUCCCCGGUCGGCG----------- ............(((((((..((.((.((((..(((((((((....((((.....)))))))))))))...(((...)))----.)))).))))..)))))))..----------- ( -36.90, z-score = -1.40, R) >consensus __________AUGUUGCGCUAGCUGCAGCCACUGGUAUAGUUAUUUGCACUAUUUGCGAAACGGUGGCUCAGAGUGGCUAGGAGCUAGGAGCUCGGUGCUCGGUGCUCG_______ ..................((((((((((((((((.........((((((.....)))))).))))))))....))))))))((((...((((.....))))...))))........ (-22.69 = -24.12 + 1.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:42:07 2011