| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,836,507 – 17,836,560 |
| Length | 53 |
| Max. P | 0.809161 |
| Location | 17,836,507 – 17,836,560 |
|---|---|
| Length | 53 |
| Sequences | 3 |
| Columns | 53 |
| Reading direction | reverse |
| Mean pairwise identity | 94.34 |
| Shannon entropy | 0.08188 |
| G+C content | 0.36079 |
| Mean single sequence MFE | -5.80 |
| Consensus MFE | -5.80 |
| Energy contribution | -5.80 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.10 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.809161 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17836507 53 - 21146708 UUGCUGUUGUUGCAACUCUUACUUUUUGAACCCUUUCCUGAGGAUAUUUUCCA ((((.......))))................((((....)))).......... ( -5.80, z-score = -0.61, R) >droSim1.chr2R 16472258 53 - 19596830 UUGCUAUAUUUGCAACUCUUACUUUUUGAACCCUUUCCUGAGGAUAUUUUCCA ((((.......))))................((((....)))).......... ( -5.80, z-score = -1.68, R) >droSec1.super_177 20493 52 - 33666 UUGCUAUGUUUGCAACUCUUAC-UUUUGAACCCUUUCCUGAGGAUAUUUUCCA ((((.......)))).......-........((((....)))).......... ( -5.80, z-score = -1.00, R) >consensus UUGCUAUAUUUGCAACUCUUACUUUUUGAACCCUUUCCUGAGGAUAUUUUCCA ((((.......))))................((((....)))).......... ( -5.80 = -5.80 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:42:05 2011