| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,824,993 – 17,825,095 |
| Length | 102 |
| Max. P | 0.580405 |
| Location | 17,824,993 – 17,825,095 |
|---|---|
| Length | 102 |
| Sequences | 7 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 77.70 |
| Shannon entropy | 0.45153 |
| G+C content | 0.58226 |
| Mean single sequence MFE | -39.00 |
| Consensus MFE | -23.95 |
| Energy contribution | -26.22 |
| Covariance contribution | 2.27 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.16 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.580405 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17824993 102 - 21146708 GUCAUUGUAAA-GCGGCAUGUCGCCCAGGGGGCGUGGCAUGUGGCUGCUACCGAGCGCAGAUACAUAUCUGCCACAUAGCUACUACCUC-UCUGCUGUCGGUGG ..(((((...(-(((((.....))).(((((..((((((((((((.(((....)))..((((....))))))))))).)))))..))))-)..)))..))))). ( -41.40, z-score = -1.47, R) >droSim1.chr2R 16460708 102 - 19596830 GUCAUUGUAAA-GCGGCAUGUCGCCCAGGGGGCGUGGCAUGCGGCUGCUACCGAGCGCAGAUACAUAUCUGCCACAUAGCUACUACCUC-UCUGCUGUCGGUGG ..........(-((.(((((((((((....)).))))))))).))).((((((((.((((((....)))))))...((((.........-...))))))))))) ( -41.70, z-score = -1.46, R) >droSec1.super_177 8990 102 - 33666 GUCAUUGUAAA-GCGGCAUGUCGCCCAGGGGGCGUGGCAUGCGGCUGCUACCGAGCGCAGAUACAUAUCUGCCACAUAGCUACUACCUC-UCUGCUGUCGGUGG ..........(-((.(((((((((((....)).))))))))).))).((((((((.((((((....)))))))...((((.........-...))))))))))) ( -41.70, z-score = -1.46, R) >droYak2.chr2R 9780809 102 + 21139217 GUCAUUGUAAA-GCGGCAUGUCGCCCUGGGGGCGUGGCAUGUGGCUGCUACCGAGCGCAGAUAUAUAUCUGCCACAUAGCUACUACCUC-UCUGCUGUCGGUGG ..........(-((.(((((((((((....)).))))))))).))).((((((((.((((((....)))))))...((((.........-...))))))))))) ( -40.80, z-score = -1.45, R) >droEre2.scaffold_4845 11957572 102 - 22589142 GUCAUUGUAAA-GCGGCAUGUCGCCCUGGGGGCGUGGCAUGUGGCUGCUACCGAGCGCAGAUAUAUAUCUGCCACAUAGCUACUACCUC-UCUGCUGUCGGUGG ..........(-((.(((((((((((....)).))))))))).))).((((((((.((((((....)))))))...((((.........-...))))))))))) ( -40.80, z-score = -1.45, R) >droAna3.scaffold_13266 11197769 98 - 19884421 GUCAUUGUAAAGGCGGCAUGACGCCCAGAGGGCGUGGCACAGGGC----ACGGAGCAUAAGGCUGAUGCUGCUAC--CGCUACUGCCUCAACUGCUGGUGGUGG ...........((((((((.((((((...))))))(((.....((----.....)).....))).)))))))).(--(((((((((.......)).)))))))) ( -37.50, z-score = -0.04, R) >droWil1.scaffold_180701 3168780 91 - 3904529 GUUGUUGUAAA-GCACCAUGCUA--AAAGGGGCGUGGCAGAUGACAGAAAGCGGCGGCGGGGGCGAG----------GGCUAUGACUGCUGUUAUUGCUGGUGG .((((..(...-...(((((((.--.....)))))))...)..))))..(((((((((((.(((...----------.)))....)))))))...))))..... ( -29.10, z-score = -0.81, R) >consensus GUCAUUGUAAA_GCGGCAUGUCGCCCAGGGGGCGUGGCAUGUGGCUGCUACCGAGCGCAGAUACAUAUCUGCCACAUAGCUACUACCUC_UCUGCUGUCGGUGG ............((.(((((((((((....)).))))))))).))..(((((((..(((((.........((......))..........)))))..))))))) (-23.95 = -26.22 + 2.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:42:01 2011