| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,805,927 – 17,805,983 |
| Length | 56 |
| Max. P | 0.856419 |
| Location | 17,805,927 – 17,805,983 |
|---|---|
| Length | 56 |
| Sequences | 5 |
| Columns | 56 |
| Reading direction | forward |
| Mean pairwise identity | 93.39 |
| Shannon entropy | 0.11517 |
| G+C content | 0.40357 |
| Mean single sequence MFE | -7.92 |
| Consensus MFE | -7.50 |
| Energy contribution | -7.42 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.856419 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17805927 56 + 21146708 AGCUUUCAUCGCGGCAAUUAGCCAUUCAUAACUCAUCUAAAGUCAACAAAGAAGCU ((((((......(((.....))).......(((.......))).......)))))) ( -7.70, z-score = -1.27, R) >droEre2.scaffold_4845 11940620 56 + 22589142 GGCUUUCAUCACGGCAAUUAGCCAUUCAUAACUCAUCCAAAGUACACAGAGCAGCU (((((((.....(((.....))).......(((.......))).....))).)))) ( -8.60, z-score = -1.83, R) >droYak2.chr2R 9761444 56 - 21139217 AGCUUUCAUCACGGCAAUUAGCCAUUCAUAACUCAUCUAAAGUACACAAAGGAGCU ((((((......(((.....))).......(((.......))).......)))))) ( -7.90, z-score = -1.78, R) >droSec1.super_9 1121010 56 + 3197100 AGCUUUCAUCGCGGCAAUUAGCCAUUCAUAACUCAUCUAAAGUCAACAAAGAAGCU ((((((......(((.....))).......(((.......))).......)))))) ( -7.70, z-score = -1.27, R) >droSim1.chr2R 16441316 56 + 19596830 AGCUUUCAUCGCGGCAAUUAGCCAUUCAUAACUCAUCUAAAGUCAACAAAGAAGCU ((((((......(((.....))).......(((.......))).......)))))) ( -7.70, z-score = -1.27, R) >consensus AGCUUUCAUCGCGGCAAUUAGCCAUUCAUAACUCAUCUAAAGUCAACAAAGAAGCU ((((((......(((.....))).......(((.......))).......)))))) ( -7.50 = -7.42 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:42:00 2011