| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,792,813 – 17,792,874 |
| Length | 61 |
| Max. P | 0.500000 |
| Location | 17,792,813 – 17,792,874 |
|---|---|
| Length | 61 |
| Sequences | 6 |
| Columns | 61 |
| Reading direction | reverse |
| Mean pairwise identity | 77.38 |
| Shannon entropy | 0.44252 |
| G+C content | 0.41986 |
| Mean single sequence MFE | -11.60 |
| Consensus MFE | -6.47 |
| Energy contribution | -7.22 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr2R 17792813 61 - 21146708 UGGAGUAAAAACGCAGAGGACAUGGCUCAGUGGCCAGAGCAAUCUUCAAAAUGAGAUAAAU ...............(((((....((((........))))..))))).............. ( -10.60, z-score = -0.46, R) >droEre2.scaffold_4845 11926603 59 - 22589142 UGGAGUAAAAACGCAGAGGACAUGGCUCAGUGGC--GAGCCAUCUUCGAAAUGAUAUAAAU ...............(((((..((((((......--))))))))))).............. ( -15.00, z-score = -2.11, R) >droYak2.chr2R 9747828 61 + 21139217 UGGAGUAAAAACGCAGGGGACAUGGCUCACUGGCUAGAGCAAUCUGCGAAAUGAGAUAAAU ...........((((((.....(((((....)))))......))))))............. ( -13.80, z-score = -1.74, R) >droSec1.super_9 1107949 61 - 3197100 UGGAGUAAAAACGCAGAGGACAUGGCUCAGUGGCCAGAGCAAUCUUCAAAAUAAGAUAAAU ...............(((((....((((........))))..))))).............. ( -10.60, z-score = -0.85, R) >droSim1.chr2R 16428275 61 - 19596830 UGGAGUAAAAACGCAGAGGACAUGGCUCAGUGGCCAGAGCAAUCUUCAAAAUGAGAUAAAU ...............(((((....((((........))))..))))).............. ( -10.60, z-score = -0.46, R) >droMoj3.scaffold_6496 10269805 56 + 26866924 -AAACUAAAA----AGAGAAAAUAAAUUCGAGGACACUCGGACUCGCAGCAUUAAGCAAAU -.........----.(((........((((((....)))))))))((........)).... ( -9.00, z-score = -2.26, R) >consensus UGGAGUAAAAACGCAGAGGACAUGGCUCAGUGGCCAGAGCAAUCUUCAAAAUGAGAUAAAU ...............(((((....((((........))))..))))).............. ( -6.47 = -7.22 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:41:59 2011