| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,609,325 – 3,609,417 |
| Length | 92 |
| Max. P | 0.635731 |
| Location | 3,609,325 – 3,609,417 |
|---|---|
| Length | 92 |
| Sequences | 7 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 71.52 |
| Shannon entropy | 0.52545 |
| G+C content | 0.44872 |
| Mean single sequence MFE | -23.23 |
| Consensus MFE | -12.42 |
| Energy contribution | -12.99 |
| Covariance contribution | 0.57 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.635731 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3609325 92 - 23011544 ---GUUUUUUAUGGCUUUAUGGCCGAGCCAAUGACUUCUUUAUUGGUGCAGGUCCUUGGCGCGGAGGA--AGCG--UUUCAGGUCUUUCCAAAUUAUUU---- ---..........(((((....(((.(((((.((((((.........).))))).))))).)))..))--))).--.....((.....)).........---- ( -24.90, z-score = -0.64, R) >droSim1.chr2L 3568395 92 - 22036055 ---GUUUUUUAUGGCUUUAUGGCCGAGCCAAUGACUUCUUUAUUGGUGCAGGUCCUUGGCCCGGAGGA--AGCG--UCUCAGGUCUUUCCAAAUUAUUU---- ---(((((((..((((....((((..((((((((.....))))))))...))))...))))...))))--))).--.....((.....)).........---- ( -26.70, z-score = -1.01, R) >droSec1.super_5 1710349 92 - 5866729 ---GUUUUUUAUGGCUUUAUGGCCGAGCCAAUGACUUCUUUAUUGGUGCAGGUCCUUGGCCCGGAGGA--AGCG--UCUCAGGUCUUUCCAAAUUAUUU---- ---(((((((..((((....((((..((((((((.....))))))))...))))...))))...))))--))).--.....((.....)).........---- ( -26.70, z-score = -1.01, R) >droYak2.chr2L 3601863 96 - 22324452 ---GUUUUUUAUGACUUUAUGGCCGAGCCAAUGACUUCUUUAUUGGUGCAGGUCCUUGGCCCAUAGCACCAACGACUCUCAGGUCUUUCCCAAUUAUUU---- ---.........(((((..((((...)))).........(..(((((((.(((.....)))....)))))))..).....)))))..............---- ( -20.60, z-score = -0.64, R) >droEre2.scaffold_4929 3647745 90 - 26641161 ---GUUUUUUAUGGCUUUAUGGCCGCACCAAUGACUUCUUUAUUGGUGCAGGUCCUUGGCCCGCAC----------UCUUCGGUCUUUCCCAACAGAUUUCCC ---(((......((((....((((((((((((((.....)))))))))).))))...)))).....----------.....((......)))))......... ( -25.80, z-score = -2.60, R) >droWil1.scaffold_180708 3004425 77 + 12563649 ---CCUUUUUAUGGUUUUAUGGC----CUAAUGACUUCUUUAUUGAAGCAGGUCCUUGGACAAGGACAU------GGACAUGGACUCAAU------------- ---........((..((((((.(----(...((.((((......)))))).((((((....))))))..------)).))))))..))..------------- ( -20.60, z-score = -1.87, R) >droMoj3.scaffold_6500 14227780 75 + 32352404 GCUCGUUUUUAUGGUUUUAUGGC----CUAAUGACUUCUUUAUUAGUGCA--UCCUUGGCC-AGGUCCU------GGACCAGGUCUCU--------------- .....................((----(((((((.....))))))).)).--..(((((((-((...))------)).))))).....--------------- ( -17.30, z-score = -0.29, R) >consensus ___GUUUUUUAUGGCUUUAUGGCCGAGCCAAUGACUUCUUUAUUGGUGCAGGUCCUUGGCCCGGAGCA__A_CG__UCUCAGGUCUUUCCAAAUUAUUU____ ............((((....((((..((((((((.....))))))))...))))...)))).......................................... (-12.42 = -12.99 + 0.57)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:14:12 2011