Locus 5106

Sequence ID dm3.chr2R
Location 17,785,255 – 17,785,326
Length 71
Max. P 0.837785
window7006

overview

Window 6

Location 17,785,255 – 17,785,326
Length 71
Sequences 7
Columns 72
Reading direction reverse
Mean pairwise identity 74.95
Shannon entropy 0.46122
G+C content 0.42167
Mean single sequence MFE -16.66
Consensus MFE -10.99
Energy contribution -11.20
Covariance contribution 0.21
Combinations/Pair 1.33
Mean z-score -1.29
Structure conservation index 0.66
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.86
SVM RNA-class probability 0.837785
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 17785255 71 - 21146708
AACUUUGGCUAAAUCGAUCCAGC-UUUUUCGAUUUGGCAAGGCUUUAUCUGUCUACCUGCUGGCCAAAAUAA
...((((((((((((((......-....)))))))((((((((.......))))...))))))))))).... ( -20.00, z-score =  -2.75, R)
>droPer1.super_4 3451653 63 + 7162766
AAUCUUGGCAAAAUCGAUUUCAU-UGAGCUGCUUUUACCAAGCUUUACCUGCUGGC---CGGGCCAA-----
.....((((..............-.(((((..........)))))..((.(....)---.)))))).----- ( -11.50, z-score =   0.99, R)
>dp4.chr3 15340657 59 - 19779522
AAUCUUGGUAAAAUCGAUUUCAU-UGAGCUGCUUUUA----GCUUUACCUGCUGGC---CGGGCCAA-----
......((((((.(((((...))-)))((((....))----))))))))...((((---...)))).----- ( -12.20, z-score =   0.19, R)
>droEre2.scaffold_4845 11919042 71 - 22589142
AACUUGGGUUGAAUCGAUCCAGC-UUUUUCGAUUUGGCAAGGCUUUAUCUGUCUACCUGCUGGCCAAAAUAA
...((((((..((((((......-....))))))..)).((((.......)))).((....))))))..... ( -17.40, z-score =  -1.15, R)
>droYak2.chr2R 9739932 72 + 21139217
AAGUUUGGUUCAAUCGAUCCAGCUUUUUUCGAUUUGGCAAGGCUUUAUCUGUCUACCUGCUGGCCAAAAUAA
...(((((((.((((((...........)))))).((((((((.......))))...))))))))))).... ( -15.50, z-score =  -0.78, R)
>droSec1.super_9 1100370 71 - 3197100
AACUUUGGCUAAAUCGAUCCAGC-UUUUUCGAUUUGGCAAGGCUUUAUCUGUCUACCUGCUGGCCAAAAUAA
...((((((((((((((......-....)))))))((((((((.......))))...))))))))))).... ( -20.00, z-score =  -2.75, R)
>droSim1.chr2R 16420750 71 - 19596830
AACUUUGGCUAAAUCGAUCCAGC-UUUUUCGAUUUGGCAAGGCUUUAUCUGUCUACCUGCUGGCCAAAAUAA
...((((((((((((((......-....)))))))((((((((.......))))...))))))))))).... ( -20.00, z-score =  -2.75, R)
>consensus
AACUUUGGCUAAAUCGAUCCAGC_UUUUUCGAUUUGGCAAGGCUUUAUCUGUCUACCUGCUGGCCAAAAUAA
...((((((((((((((...........))))))))...((((.......))))........)))))).... (-10.99 = -11.20 +   0.21)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:41:56 2011