| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,782,708 – 17,782,806 |
| Length | 98 |
| Max. P | 0.533221 |
| Location | 17,782,708 – 17,782,806 |
|---|---|
| Length | 98 |
| Sequences | 10 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 69.94 |
| Shannon entropy | 0.60006 |
| G+C content | 0.54039 |
| Mean single sequence MFE | -27.50 |
| Consensus MFE | -12.57 |
| Energy contribution | -12.75 |
| Covariance contribution | 0.18 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.00 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.533221 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17782708 98 - 21146708 -UGAACAGGCUGCCG---UCUGCCGGUUGGCAACCGCACGACAGGGCUCAGACACAUGAGCUGGAUCGCUUGA----UAUAUGGCAAAGCUAAAUGCUGGAGAAAG -....(((((..(((---(((((.(((.....)))))).)))..((((((......))))))))...))))).----.....((((........))))........ ( -29.30, z-score = -0.34, R) >droSim1.chr2R 16418143 98 - 19596830 -UGAACAGGCGGCCG---UCUGCCGGUUGGCAACCGCACGACAGGGCUCAGACACAUGAGCUGGAUCGCUUGA----UAUAUGGCAGAGCUAAAUGCUGGAGAAAG -....((((((((((---(((((.(((.....)))))).)))..((((((......)))))))).))))))).----.....((((........))))........ ( -33.90, z-score = -1.53, R) >droSec1.super_9 1097765 98 - 3197100 -UGAACAGGCGGCCG---ACUGCCGGUUGGCAACCGCACGACAGGGCUCAGACACAUGAGCUGGAUAGCUUGA----UAUAUGGCAGAGCUAAAUGCUGGAGAAAG -......((..((((---((.....))))))..))...(..(((((((((......))))))...((((((..----.........))))))....)))..).... ( -31.50, z-score = -1.66, R) >droYak2.chr2R 9737197 98 + 21139217 -UGAACAGGCUGCCG---UCCGCCGGUUGGCAACCGCACGACAGGGCUCAGACACAUGAGCUGGAUCGCUUGA----UAUAUGGCAGAGCUAAAUGCUGGGGAAAG -........((((((---(((.((.((((((....)).)))).))(((((......))))).))(((....))----)..)))))))(((.....)))........ ( -28.90, z-score = 0.40, R) >droEre2.scaffold_4845 11916467 97 - 22589142 -UGAACAGGCUG-CG---UCCGCCGGUUGGCAACCGCACGACAGGGCUCAGACACAUGAGCUGGAUCGCUUGA----UAUAUGGCAGAGCUAAAUGCCGGGGAAAG -....(((((..-.(---(((.((.((((((....)).)))).))(((((......))))).)))).))))).----....(((((........)))))....... ( -31.90, z-score = -0.60, R) >droAna3.scaffold_13266 11161536 105 - 19884421 -UGAACAGGCUGCCGCCAUCUACUGGCCGAAAACCGCACGACAGGGCUCAGACACAUGAGCUGGAUCGGUUGAUAUGUAUAUGGCGGAGCUAAACGCCGAGGACGA -......((((.(((((((.(((.((((((...((........))(((((......)))))....)))))).....))).)))))))))))...(((....).)). ( -36.70, z-score = -2.20, R) >droWil1.scaffold_180701 3108186 86 - 3904529 AUGAGCGAGCAGGCU---UCAUUCAGUUGAUA--UAUAUGGCCCGAACCAGGGACCAAAAUUG--UUGUUUAG-AAACACAGAGUACAAGAGAU------------ .(((((.(((((...---(((......)))..--....((((((......))).)))...)))--))))))).-....................------------ ( -15.60, z-score = -0.35, R) >droVir3.scaffold_12875 10251619 74 + 20611582 -UAAACAGGCUG---------GCAGUCAGGCAACCGCACGACAGGGCUCAGACACAUGAGCUGGCUCGUUUGA----UAUAUGGCAGA------------------ -....(((((.(---------((.(((..((....))..)))..((((((......)))))).))).))))).----...........------------------ ( -22.40, z-score = -1.22, R) >droMoj3.scaffold_6496 16614089 74 - 26866924 -UAAACAGGCUG---------GCAGUCAGGCAACCGCACGACAGGGCUCAGACACAUGAGCUGGCUCGUUUGA----UAUAUGGCAGA------------------ -....(((((.(---------((.(((..((....))..)))..((((((......)))))).))).))))).----...........------------------ ( -22.40, z-score = -1.22, R) >droGri2.scaffold_15245 14818089 74 + 18325388 -UAAACAGGCUG---------GCAGUCAGGCAACCGCACGACAGGGCUCAGACACAUGAGCUGGCUCGUUUGA----UAUAUGGCAGA------------------ -....(((((.(---------((.(((..((....))..)))..((((((......)))))).))).))))).----...........------------------ ( -22.40, z-score = -1.22, R) >consensus _UGAACAGGCUGCCG___UCUGCCGGUUGGCAACCGCACGACAGGGCUCAGACACAUGAGCUGGAUCGCUUGA____UAUAUGGCAGAGCUAAAUGC_GG_GAAAG .....(((((...........((......)).............((((((......)))))).....))))).................................. (-12.57 = -12.75 + 0.18)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:41:55 2011