| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,766,876 – 17,766,986 |
| Length | 110 |
| Max. P | 0.929751 |
| Location | 17,766,876 – 17,766,986 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 80.84 |
| Shannon entropy | 0.37149 |
| G+C content | 0.45768 |
| Mean single sequence MFE | -30.01 |
| Consensus MFE | -21.82 |
| Energy contribution | -23.27 |
| Covariance contribution | 1.45 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.35 |
| SVM RNA-class probability | 0.929751 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17766876 110 + 21146708 UCCCUUUUUUCU----UCGUUUCUCGGGUUUUCGCCUGCACCUGUUGUCGCACCAGUAAACUGGAAAAGUUGCUGAAAACUAAGGGAAAGUCUUGAAGAUUUUACCUGCGAUAG ............----........(((((....))))).......((((((.((((....))))...((((......)))).(((.((((((.....)))))).))))))))). ( -26.30, z-score = -0.47, R) >droSim1.chr2R 16402285 110 + 19596830 UCCCUUUUUUCU----UCCUUUCUCGGGUUUUCGCCUGCACCUGUUGUCGCACCAGUAAACUGGAAAAGUUGCUGAAAAGUAUGGGAAGGUCUUGAAGAUUUUCCCUGCGAUAG ............----........(((((....))))).......(((((((((((....))))......((((....)))).(((((((((.....)))))))))))))))). ( -33.30, z-score = -2.34, R) >droSec1.super_9 1082026 110 + 3197100 UCCCUUUUUUCU----UCCAUUCUCGGGUUUUCGCCUGCACCUGUUGUCGCACCAGUAAACUGGAAAAGUUGCUGAAAAGUAAGGGAAGGUCUUGAAGAUUUUCCCUGCGAUAG ............----........(((((....))))).......(((((((((((....)))).....(((((....)))))(((((((((.....)))))))))))))))). ( -34.60, z-score = -2.57, R) >droYak2.chr2R 9720857 114 - 21139217 UCCCUUUUUUUUGUAUUCCUUUCCCGGAUUUGCGCCUGCACCUGUUGUCGCACCAGUAAACUGGAAAAGUUGCCGAAAAGUGAGGGAAAGUCUUGAAGAUUUUCCCUGCGAUAG ......(((((.(((...((((.((((.(((((...(((..(....)..)))...))))))))).)))).))).)))))((.((((((((((.....))))))))))))..... ( -32.30, z-score = -2.41, R) >droEre2.scaffold_4845 11900420 109 + 22589142 UCCCUUUUUUCU----UGCUUUC-CGGGUUUUCGCCUGCACCUGUUGUCGCACCAGUAAACUGGAAAAGUUGCUGAAAAGUAAGGGAAAGUCUUGAAGAUUUUCCCUGCGAUAG ............----.......-(((((....))))).......(((((((((((....)))).....(((((....)))))(((((((((.....)))))))))))))))). ( -35.20, z-score = -3.00, R) >droPer1.super_4 3432609 99 - 7162766 ---------UUCAGGCCCAAAACACACAUCUCCACCUGCACCUGUUGUCGCACCAG-AAACUGGAAAACUGGCCGAAAAUUCGGCACAAG-----AAAAUGCCCCAUUCGAUGA ---------.................((((.......(((..(.((((....((((-...)))).......(((((....))))))))).-----)...))).......)))). ( -18.34, z-score = 0.14, R) >consensus UCCCUUUUUUCU____UCCUUUCUCGGGUUUUCGCCUGCACCUGUUGUCGCACCAGUAAACUGGAAAAGUUGCUGAAAAGUAAGGGAAAGUCUUGAAGAUUUUCCCUGCGAUAG ........................(((((....)))))......((((((((((((....))))...................(((((((((.....))))))))))))))))) (-21.82 = -23.27 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:41:51 2011