| Sequence ID | dm3.chr2R |
|---|---|
| Location | 17,758,633 – 17,758,729 |
| Length | 96 |
| Max. P | 0.550555 |
| Location | 17,758,633 – 17,758,729 |
|---|---|
| Length | 96 |
| Sequences | 8 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 78.98 |
| Shannon entropy | 0.38762 |
| G+C content | 0.39789 |
| Mean single sequence MFE | -24.79 |
| Consensus MFE | -11.31 |
| Energy contribution | -11.62 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.550555 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 17758633 96 - 21146708 ----CAUAUUUGCUAAAUCAGCAAAUGUGUCGC----CCAAGAAGGGUGGGCAAAAAA--------AAAGUGCACGGGAAUUCUGCUUGAUGUAGAAUGAAACGCAUUAAUU ----((((((((((.....))))))))))..((----(((.......)))))......--------..(((((......(((((((.....))))))).....))))).... ( -30.50, z-score = -3.81, R) >droEre2.scaffold_4845 11892057 93 - 22589142 ----CAUAUUUGCUAAAUCAGCAAAUGUGUCGC----CCAAGGAGGGUGGGCAAA-----------AAAGUGCACGGGAAUUCUGCUUGAUGUAGAAUGAAACGCAUUAAUU ----((((((((((.....))))))))))..((----(((.......)))))...-----------..(((((......(((((((.....))))))).....))))).... ( -30.50, z-score = -3.48, R) >droYak2.chr2R 9711942 104 + 21139217 ----CAUAUUUGCUAAAUCAGCAAAUGUGUCGC----CCAAGAAGGGUGGGCAAAAAAAAAAAAGCAAAGUGCACGGGAAUUCUGCUUGAUGUAGAUUGAAACGCAUUAAUU ----((((((((((.....))))))))))..((----(((.......)))))................(((((........(((((.....))))).......))))).... ( -27.76, z-score = -2.33, R) >droSec1.super_9 1073703 94 - 3197100 ----CAUAUUUGCUAAAUCAGCAAAUGUGUCGC----CCAAGAAGGGUGGGCAAAA----------AAAGUGCACGGGAAUUCUGCUUGAUGUAGAAUGAAACGCAUUAAUU ----((((((((((.....))))))))))..((----(((.......)))))....----------..(((((......(((((((.....))))))).....))))).... ( -30.50, z-score = -3.81, R) >dp4.chr3 15311596 96 - 19779522 UCUGCUCUCUGGAAAAAUCAGCAAAUGUGUCAC-----CA-AAAGAACGAGC---AAAA-------AAACUGCACGGGAAUUCUGCUUGAUGUAGAAAGAAACGCAUUAAUU ..((((.............))))(((((((...-----..-......((.((---(...-------....))).))....((((((.....))))))....))))))).... ( -17.12, z-score = -0.24, R) >droPer1.super_4 3422926 95 + 7162766 UCUGCUCUCUGGAAAAAUCAGCAAAUGUGUCAC-----CA-AAAGAACGAGC----AAA-------AAACUGCACGGGAAUUCUGCUUGAUGUAGAAAGAAACGCAUUAAUU ..((((.............))))(((((((...-----..-......((.((----(..-------....))).))....((((((.....))))))....))))))).... ( -17.62, z-score = -0.35, R) >droWil1.scaffold_180701 3069746 103 - 3904529 CCAACCAGCUGG--AAAUCAGCAAAUGUGUCACACUCACAUAAAAAGUGAGCAGAAAAA-------AAACUGCACGGGAAUUCUGCUUGAUGUAGAAAAAAACGCAUUAAUU .......((((.--....)))).(((((((....(((.(((.....))).((((.....-------...))))..)))..((((((.....))))))....))))))).... ( -24.60, z-score = -2.62, R) >droAna3.scaffold_13266 11139643 94 - 19884421 CCGAGAAGUUUGCCAAAUCAGCAAAUGUGUCAC----UGAAGGAGGCU--GCAA------------AAACUGCACGGGAAUUCUGCUUGAUGUAGAAUGAAACGCAUUAAUU (((.((.((((((.......))))))...))..----..........(--(((.------------....)))))))..(((((((.....))))))).............. ( -19.70, z-score = 0.16, R) >consensus ____CAUAUUUGCUAAAUCAGCAAAUGUGUCAC____CCAAGAAGGGUGGGCAAAAAA________AAACUGCACGGGAAUUCUGCUUGAUGUAGAAUGAAACGCAUUAAUU .......................(((((((.................((.(((.................))).))....((((((.....))))))....))))))).... (-11.31 = -11.62 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:41:49 2011