| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,606,254 – 3,606,362 |
| Length | 108 |
| Max. P | 0.791492 |
| Location | 3,606,254 – 3,606,362 |
|---|---|
| Length | 108 |
| Sequences | 12 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 74.73 |
| Shannon entropy | 0.50909 |
| G+C content | 0.47413 |
| Mean single sequence MFE | -29.78 |
| Consensus MFE | -19.13 |
| Energy contribution | -18.93 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.03 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.791492 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3606254 108 + 23011544 UGUUCUGAGCC--AGUUUUGAACUUGAACCCACCUUGUUCUCUGCUUAAGUUGAGCUCGUCAUCCACGGUUAUGUUGCUGAUGGGUGAGGCCGAUGUGGAAGACAUUAUA------- .((((.(((..--..))).))))............(((..((..(....((((.(((..(((((((((((......)))).)))))))))))))))..))..))).....------- ( -28.80, z-score = -0.45, R) >droSim1.chr2L 3564742 108 + 22036055 CGUUCUGAGCC--AGUUUUGAACUUGAACCCACCUUGUUCUCUGCUUAAGUUGAGCUCGUCAUCCACGGUUAUGUUGCUGAUGGGCGAGGCCGAUGUGGAAGACAUUAUA------- .((((.(((..--..))).))))......((((.(((..(((.((....))...((((((((.(.(((....))).).)))))))))))..))).))))...........------- ( -28.50, z-score = -0.15, R) >droSec1.super_5 1706958 108 + 5866729 CGUUCUGAGCC--AGUUUUGAACUUGAACCCACCUUGUUCUCUGCUUAAGUUGAGCUCGUCAUCCACGGUUAUGUUGCUGAUGGGCGAGGCCGAUGUGGAAGACAUUAUA------- .((((.(((..--..))).))))......((((.(((..(((.((....))...((((((((.(.(((....))).).)))))))))))..))).))))...........------- ( -28.50, z-score = -0.15, R) >droYak2.chr2L 3598658 113 + 22324452 CGUUUUGAGCCUGAGUUUUGAACUUGAACCCACCUUGUUCUCUGCUUAAGUUGAGCUCGUCAUCCACGGUUAUGUUGCUGAUGGGCGAGGCCGAUGUGGAAGACAUUCUUCGA---- ((..(((.((((((((...((((..(.......)..))))...)))).......((((((((.(.(((....))).).)))))))).)))))))..))((((.....))))..---- ( -31.60, z-score = -0.54, R) >droEre2.scaffold_4929 3644709 108 + 26641161 CGUUCUGAGCC--AGUUUUGGACUUGAACCCACCUUGUUCUCUGCUUAAGUUGAGCUCGUCAUCCACGGUUAUGUUGCUGAUGGGCGAGGCGGAUGUGGAGGACAUUAUA------- .((((.(((((--......)).)))))))......(((((((..(....(((..((((((((.(.(((....))).).))))))))..)))....)..))))))).....------- ( -36.70, z-score = -1.73, R) >droAna3.scaffold_12916 5657026 106 + 16180835 -GGUUUGAAAGU-AUCUUUUUGUU--AACCCACCUUGUUCUCUGCUUAAGUUGAGCUCGUCAUCCACUGUUAUGUUGCUGAUGGGCGAGGCCGAUGUGGAAGACAUUAUA------- -((((.(((((.-..)))))....--)))).....(((..((..(....(((..((((((((.(.((......)).).))))))))..)))....)..))..))).....------- ( -27.30, z-score = -0.88, R) >dp4.chr4_group3 6555829 105 - 11692001 ------------CUGUUUUUUGCGGAUAAUUACCUUGUUCUCUGCUGAUAUUGAGCUCGUCGUCGACGGUUAUGUUGCUGAUCGGCGAGGCGGAAGUGGAAGACAUGGUAAUCCCCG ------------..........(((...((((((.(((..((..((........(((..(((((((((((......)))).))))))))))...))..))..))).))))))..))) ( -35.50, z-score = -2.19, R) >droPer1.super_1 3655596 105 - 10282868 ------------CUGUUUUUAGCGGAUAAUUACCUUGUUCUCUGCUGAUAUUGAGCUCGUCGUCGACGGUUAUGUUGCUGAUCGGCGAGGCGGAAGUGGAAGACAUGGUAAUCCCCG ------------..........(((...((((((.(((..((..((........(((..(((((((((((......)))).))))))))))...))..))..))).))))))..))) ( -35.50, z-score = -2.09, R) >droWil1.scaffold_180708 3000688 88 - 12563649 ----------------------UGGAAAUUUACCUUGUUCUCUGCUCAAAUUAAGUUCGUCAUCCACUGUUAUGUUGCUGAUGGGUGAGGCCGAUGUGGAAGACAUUAUU------- ----------------------.............(((..((..(((..........(((((.(.((......)).).)))))((.....)))).)..))..))).....------- ( -16.60, z-score = 0.78, R) >droVir3.scaffold_12963 5048990 97 - 20206255 ---------------UGCCUU-UUGCUGCUUACCUUGUUCUCUGCUUAUGUUAAGCUCGUCGUCCACGGUUAUGUUGCUGAUGGGCGAGGCGGAAGUGGAAGACAUAUUCCCU---- ---------------...(((-((((((((((.(..((.....))....).)))))...(((((((((((......)))).))))))))))))))).((((......))))..---- ( -30.00, z-score = -1.37, R) >droMoj3.scaffold_6500 14223759 93 - 32352404 -------------------UU-CUCGUGCCUACCUUGUUCUCUGCUUAUGUUAAGCUCGUCGUCCACGGUUAUGUUGCUGAUGGGCGAAGCUGAAGUGGAAGACAUAUUCCCU---- -------------------..-.............(((..((..(((......((((..(((((((((((......)))).))))))))))).)))..))..)))........---- ( -28.50, z-score = -2.27, R) >droGri2.scaffold_15126 4250619 99 + 8399593 --------------UUAUUUAGCUGGUGCUUACCUUGUUCUCUGCUUAUGUUAAGCUCGUCGUCCACGGUUAUGUUGCUGAUGGGCGAGGCGGAAGUAGAAGACAUAUUCCCU---- --------------......(((....))).....(((..(((((((.......(((..(((((((((((......)))).))))))))))..)))))))..)))........---- ( -29.80, z-score = -1.35, R) >consensus _____________AGUUUUUAACUGGAACCCACCUUGUUCUCUGCUUAAGUUGAGCUCGUCAUCCACGGUUAUGUUGCUGAUGGGCGAGGCCGAUGUGGAAGACAUUAUA_______ ...................................(((..(((((.........((((((((.(.(((....))).).)))))))).........)))))..)))............ (-19.13 = -18.93 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:14:11 2011