| Sequence ID | dm3.chr2L |
|---|---|
| Location | 426,999 – 427,096 |
| Length | 97 |
| Max. P | 0.993290 |
| Location | 426,999 – 427,096 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 80.22 |
| Shannon entropy | 0.35126 |
| G+C content | 0.48018 |
| Mean single sequence MFE | -27.03 |
| Consensus MFE | -14.98 |
| Energy contribution | -15.15 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.20 |
| Mean z-score | -3.24 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.60 |
| SVM RNA-class probability | 0.993290 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 426999 97 - 23011544 GGGCUCGGCAAAGAGAAGGAGCGGGGGGGGG---GGGCUGGUUGCCAU-AUUAUUAUGGUAACACAGUUUU---AGGCAGAAAUAGAAAUAAACCGCAGGAAAA ...(((......))).....((((......(---((((((((((((((-(....))))))))).)))))))---.........((....))..))))....... ( -28.40, z-score = -4.10, R) >droPer1.super_1 7604889 99 + 10282868 GGGUCCCACAGAGCGGGGCGAAGGGGGAGGGGCUGGGGUAGGUGUGAUGAUUAUUAUGGUAACACAGUUUUUGGCGGCAGAAAUAGAGAC-AACCGCAAA---- ..(((((.......)))))..............((.(((..((((.((.((....)).)).)))).(((((((.(....)...)))))))-.))).))..---- ( -22.40, z-score = 0.32, R) >droEre2.scaffold_4929 478962 90 - 26641161 GGGCUCAGGAAAGAAGAGGAGCUCA-----G---GGACUGGUUGCCAU-AUUAUUAUGGUAACACAGUUUU---AGGCAGAAAUAGAAAUAAACCGCAGGAA-- ((((((............)))))).-----(---((((((((((((((-(....))))))))).)))))))---..((.(...((....))..).)).....-- ( -27.00, z-score = -4.12, R) >droYak2.chr2L 411466 91 - 22324452 GGGCUCGGGAAGGAAAAGGAGCCGA-----G---GGGCUGGUUGCCAU-GUUAUUAUGGUAACACAGUUUU---AGGCAGAAAUAGAAAUAAACCGCAGGGAA- ...(((((............(((..-----(---((((((((((((((-(....))))))))).)))))))---.))).....((....))..))).))....- ( -28.60, z-score = -3.52, R) >droSec1.super_14 410861 92 - 2068291 GGGCUCGGGAAAGAGAAGGAGCUGG-----G---GGGCUGGUUGCCAU-AUUAUUAUGGUAACACAGUUUU---AGGCAGAAAUAGAAAUAAACCGCAGGAAAA ((.(((......))).....(((..-----(---((((((((((((((-(....))))))))).)))))))---.)))...............))......... ( -27.90, z-score = -4.01, R) >droSim1.chr2L 433464 92 - 22036055 GGGCUCGGGAAAGAGAAGGAGCUGG-----G---GGGCUGGUUGCCAU-AUUAUUAUGGUAACACAGUUUU---AGGCAGAAAUAGAAAGAAACCGCAGGAAAA ((.(((......))).....(((..-----(---((((((((((((((-(....))))))))).)))))))---.)))...............))......... ( -27.90, z-score = -4.02, R) >consensus GGGCUCGGGAAAGAGAAGGAGCUGG_____G___GGGCUGGUUGCCAU_AUUAUUAUGGUAACACAGUUUU___AGGCAGAAAUAGAAAUAAACCGCAGGAAA_ ((((((............))))............((((((((((((((.......)))))))).)))))).......................))......... (-14.98 = -15.15 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:05:43 2011